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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 13760next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]} 116 PDB0516 1-116 -70.500 100  1dlw_A mol:protein length:116 HEMOGLOBIN
2 d2gkma_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]} 127 PDB0516 1-127 -71.400 99  2gl3_A mol:protein length:136 Hemoglobin-like protein HbN
3 d2qrwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]} 126 PDB0516 1-126 -88.000 99  1ngk_A mol:protein length:128 Hemoglobin-like protein HbO
4 d2bkma_ a.1.1.1 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]} 128 PDB0516 1-128 -90.200 100  2bkm_A mol:protein length:128 TRUNCATED HEMOGLOBIN FROM GEOBACILLUS STEAROT
5 d4i0va_ a.1.1.1 (A:) automated matches {Synechococcus sp. [TaxId: 32049]} 123 PDB0516 1-123 -75.400 100  2ksc_A mol:protein length:123 Cyanoglobin
6 d1asha_ a.1.1.2 (A:) Ascaris hemoglobin, domain 1 {Pig roundworm (Ascaris suum) [TaxId: 6253]} 147 PDB0516 1-147 -67.000 100  1ash_A mol:protein length:150 HEMOGLOBIN (OXY)
7 d2dc3a_ a.1.1.2 (A:) Cytoglobin {Human (Homo sapiens) [TaxId: 9606]} 172 PDB0516 2-172 -75.800 98  1umo_A mol:protein length:190 CYTOGLOBIN
8 d4hsxa_ a.1.1.2 (A:) Dehaloperoxidase {Amphitrite ornata [TaxId: 129555]} 137 PDB0516 1-137 -63.300 100  4hsw_A mol:protein length:137 Dehaloperoxidase A
9 d1ecaa_ a.1.1.2 (A:) Erythrocruorin {Midge (Chironomus thummi thummi), fraction III [TaxId: 7154]} 136 PDB0516 1-136 -65.500 100  1eca_A mol:protein length:136 ERYTHROCRUORIN (AQUO MET)
10 d1x9fd_ a.1.1.2 (D:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit D1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} 140 PDB0516 1-140 -67.400 100  1x9f_D mol:protein length:140 hemoglobin chain d1
11 d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} 149 PDB0516 1-149 -67.700 71  4u8u_C mol:protein length:151 Globin c Chain
12 d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} 150 PDB0516 1-146 -94.800 50  1vhb_A mol:protein length:146 HEMOGLOBIN
13 d1jl7a_ a.1.1.2 (A:) Glycera globin {Marine bloodworm (Glycera dibranchiata) [TaxId: 6350]} 147 PDB0516 1-147 -76.000 100  1jf3_A mol:protein length:147 monomer hemoglobin component III
14 d1it2a_ a.1.1.2 (A:) Hagfish hemoglobin {Inshore hagfish (Eptatretus burgeri) [TaxId: 7764]} 146 PDB0516 1-146 -79.800 100  1it2_A mol:protein length:146 hemoglobin
15 d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor domain {Bacillus subtilis [TaxId: 1423]} 169 PDB0516 1-169 -74.300 100  1or4_A mol:protein length:178 Heme-based aerotactic transducer hemAT
16 d1itha_ a.1.1.2 (A:) Hemoglobin {Innkeeper worm (Urechis caupo) [TaxId: 6431]} 141 PDB0516 1-141 -70.100 100  1ith_A mol:protein length:141 HEMOGLOBIN (CYANO MET)
17 d3g46a_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]} 146 PDB0516 1-146 -69.100 99  3uhi_A mol:protein length:146 Globin-1
18 d1b0ba_ a.1.1.2 (A:) Hemoglobin I {Clam (Lucina pectinata) [TaxId: 244486]} 142 PDB0516 1-142 -67.800 100  1b0b_A mol:protein length:142 HEMOGLOBIN
19 d1gcva_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Houndshark (Mustelus griseus) [TaxId: 89020]} 140 PDB0516 1-140 -88.000 100  1gcv_A mol:protein length:140 HEMOGLOBIN
20 d3d1kb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]} 146 PDB0516 1-146 -86.400 67  1v4u_B mol:protein length:146 hemoglobin beta chain


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]