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anford Burnham Prebys Medical Discovery Institute
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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4725next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16763391|ref|NP_459006.1| thr operon leader peptide (STM0001) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-21) 21 VFDB 1-17 -3.690 23  VFG000955(gi:19746911) (emm) M18 protein precursor [M protein (VF0242)] [Streptococcus pyogenes MGAS8232]
2 gi|16763392|ref|NP_459007.1| bifunctional aspartokinase I/homoserine dehydrogenase I (STM0002) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-820) 820 VFDB 196-752 -6.200 12  VFG002074(gi:15595286) (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
3 gi|16763393|ref|NP_459008.1| homoserine kinase (STM0003) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-309) 309 VFDB 1-308 -25.400 16  VFG001953(gi:15792743) (hddA) D-glycero-D-manno-heptose 7-phosphate kinase [Capsule (VF0323)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
4 gi|16763394|ref|NP_459009.1| threonine synthase (STM0004) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-428) 428 VFDB 29-254 -4.510 11  VFG041341(gi:52842733) (lpg2525) Dot/Icm type IV secretion system effector [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
5 gi|16763395|ref|NP_459010.1| hypothetical protein (STM0005) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-257) 257 VFDB 110-218 -5.740 13  VFG002423(gi:151222088) (scn) complement inhibitor SCIN [SCIN (VF0425)] [Staphylococcus aureus subsp. aureus str. Newman]
6 gi|16763396|ref|NP_459011.1| alanine/glycine transport protein (STM0006) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-476) 476 VFDB 16-286 -4.540 13  VFG001850(gi:52842892) (dotA) Dot/Icm type IV secretion system protein DotA [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
7 gi|16763397|ref|NP_459012.1| transaldolase B (STM0007) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-317) 317 VFDB 20-251 -8.060 12  VFG043390(gi:15646189) (pdxJ) pyridoxine 5`-phosphate synthase [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]
8 gi|16763398|ref|NP_459013.1| molybdenum cofactor biosynthesis protein MogA (STM0008) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-196) 196 VFDB 46-146 -6.170 15  VFG002532(gi:53720917) (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
9 gi|16763399|ref|NP_459014.1| hypothetical protein (STM0009) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-188) 188 VFDB 45-188 -5.790 13  VFG002151(gi:15605597) (copB2) Type III secretion system translocator CopB2 [TTSS (VF0344)] [Chlamydia trachomatis D/UW-3/CX]
10 gi|16763400|ref|NP_459015.1| hypothetical protein (STM0010) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-237) 237 VFDB 1-166 -5.930 13  VFG006592(gi:15645645) (fliM) flagellar motor switch protein FliM [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]
11 gi|16763401|ref|NP_459016.1|(removed signalp:1-23) hypothetical protein (STM0011) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 24-134) 111 VFDB 28-97 -5.220 10  VFG000951(gi:21910837) (spea) streptococcal exotoxin A precursor - phage associated [Spes (VF0248)] [Streptococcus pyogenes MGAS315]
12 gi|16763402|ref|NP_459017.1| molecular chaperone DnaK (STM0012) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-638) 638 VFDB 3-404 -9.100 14  VFG010479(gi:52841162) (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI111)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
13 gi|16763403|ref|NP_459018.1| chaperone protein DnaJ (STM0013) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-379) 379 VFDB 4-339 -4.730 15  VFG001218(gi:15600233) (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
14 gi|16763404|ref|NP_459019.1| transcriptional regulator (STM0014) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-315) 315 VFDB 7-314 -40.600 11  VFG000441(gi:17233493) (spvR) Salmonella plasmid virulence: regulation of spv operon, lysR family [Spv (VF0107)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
15 gi|16763405|ref|NP_459020.1| bacteriophage protein (STM0015) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-114) 114 VFDB 3-114 -5.560 13  VFG041010(gi:15595268) (tagQ) type VI secretiona ssociated protein TagQ, outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
16 gi|16763406|ref|NP_459021.1| hypothetical protein (STM0016) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-177) 177 VFDB 3-121 -6.450 15  VFG000823(gi:15804240) (etgA) T3SS-associated peptidoglycan lytic enzyme [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
17 gi|16763407|ref|NP_459022.1| hypothetical protein (STM0017) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-147) 147 VFDB 1-133 -42.000 16  VFG002471(gi:53722574) (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
18 gi|16763408|ref|NP_459023.1| exochitinase (STM0018) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-699) 699 VFDB 173-598 -6.380 12  VFG000434(gi:17233482) (pefC) plasmid-encoded fimbriae usher protein PefC [Pef (VF0104)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
19 gi|16763409|ref|NP_459024.1| hydroxymethyltransferase (STM0019) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-998) 998 VFDB 4-527 -9.200 12  VFG001280(gi:21282246) (sdrD) Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [SDr (VF0019)] [Staphylococcus aureus subsp. aureus MW2]
20 gi|16763410|ref|NP_459025.1| cytoplasmic protein (STM0020) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-234) 234 VFDB 2-225 -24.600 VFG045595(gi:52842925) (legN) Dot/Icm type IV secretion system effector LegN [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
40-228 -40.500 11  VFG000072(gi:16802246) (prfA) listeriolysin positive regulatory protein [PrfA (VF0062)] [Listeria monocytogenes EGD-e]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]