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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|6319249|ref|NP_009332.1|(removed signalp:1-20) hypothetical protein; Pau8p (YAL068C) [Saccharomyces cerevisiae] 100 JCSG0516 9-81 -7.040 NN9114A NP_107265.1 400896 Cloned-2009-07-10
2 gi|33438754|ref|NP_878038.1| Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching; Yal067w-ap (YAL067W-A) [Saccharomyces cerevisiae] 75 JCSG0516 2-46 -5.570 20  MA16112A NP_083023.1 400173 Cloned-2009-02-26
3 gi|6319250|ref|NP_009333.1| Putative permease, member of the allantoate transporter subfamily of the major facilitator superfamily; mutation confers resistance to ethionine sulfoxide; Seo1p (YAL067C) [Saccharomyces cerevisiae] 593 JCSG0516 132-565 -29.900 10  TM1007 TM1007 354152 Purified-2001-10-30
4 gi|6319252|ref|NP_009335.1| Putative protein of unknown function; has homology to FLO1; possible pseudogene; (YAL065C) [Saccharomyces cerevisiae] 128 JCSG0516 112-127 -7.270 31  SP18376A NP_372096.1 413708 Purified-2010-11-20
5 gi|6319253|ref|NP_009336.1| Fungal-specific protein of unknown function; Yal064w-bp (YAL064W-B) [Saccharomyces cerevisiae] 126 JCSG0516 69-119 -5.940 23  SP19381A YP_002937011.1 411144 Purified-2010-09-29
6 gi|7839146|ref|NP_058136.1| Putative protein of unknown function; YAL064C-A is not an essential gene; Yal064c-ap (YAL064C-A) [Saccharomyces cerevisiae] 126 JCSG0516 1-106 -11.700 SP17392A ZP_03460696.1 407633 Purified-2010-09-29
7 gi|6319254|ref|NP_009337.1| Protein of unknown function; may interact with ribosomes, based on co-purification experiments; (YAL064W) [Saccharomyces cerevisiae] 108 JCSG0516 1-108 -6.400 22  RH11939G NP_436994.1 416317 Selected-2009-12-04
8 gi|33438755|ref|NP_878039.1| Putative protein of unknown function; identified by expression profiling and mass spectrometry; Yal063c-ap (YAL063C-A) [Saccharomyces cerevisiae] 96 JCSG0516 26-95 -6.440 24  SP19163A YP_909014.1 409986 Purified-2010-09-29
9 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] (Range: 1-500) 500 JCSG0516 5-499 -14.000 RF20619A.CABIN1 BC054497 421217 Purified-2010-12-07
165-500 -16.900 14  SP2600M ZP_02027330.1 411361 Selected-2009-11-12
245-500 -21.100 RF20622A.ZCCHC8 BC065918 421231 Purified-2010-12-01
10 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] (Range: 251-750) 500 JCSG0516 1-169 -16.500 14  SP2600AD YP_794564.1 411897 Selected-2009-11-12
1-251 -16.100 RF20622A.ZCCHC8 BC065918 421231 Purified-2010-12-01
267-439 -14.000 11  SP2363I ZP_03458730.1 407556 Purified-2010-09-29
319-500 -14.900 11  SP2363E ZP_02069969.1 409482 Purified-2010-09-29
11 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] (Range: 501-1000) 500 JCSG0516 1-173 -17.500 SP2600AD YP_794564.1 411897 Selected-2009-11-12
1-252 -17.400 RF20622A.ZCCHC8 BC065918 421231 Purified-2010-12-01
13-423 -14.500 RF20619A.CABIN1 BC054497 421217 Purified-2010-12-07
300-500 -15.500 15  SP2363O YP_001299585.1 409884 Selected-2009-11-12
336-500 -15.800 13  SP2363A YP_211281.1 407957 Purified-2010-09-29
12 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] (Range: 751-1250) 500 JCSG0516 1-172 -19.200 11  SP2600AD YP_794564.1 411897 Selected-2009-11-12
1-250 -17.600 RF20622A.ZCCHC8 BC065918 421231 Purified-2010-12-01
34-462 -15.100 10  SP17586C NP_439153.1 411588 Selected-2009-11-12
305-500 -16.900 SP2363O YP_001299585.1 409884 Selected-2009-11-12
13 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] (Range: 1001-1298) 298 JCSG0516 1-279 -16.900 16  SP2600M ZP_02027330.1 411361 Selected-2009-11-12
10-256 -20.200 RF20622A.ZCCHC8 BC065918 421231 Purified-2010-12-01
14 gi|6319256|ref|NP_009339.1| NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh1p; expression regulated by nitrogen and carbon sources; Gdh3p (YAL062W) [Saccharomyces cerevisiae] 457 JCSG0516 30-447 -62.900 19  FL11458A YP_009599.1 375534 Crystal|NMR-2007-06-28
15 gi|6319257|ref|NP_009340.1| Putative medium-chain alcohol dehydrogenase with similarity to BDH1; transcription induced by constitutively active PDR1 and PDR3; BDH2 is an essential gene; Bdh2p (YAL061W) [Saccharomyces cerevisiae] 417 JCSG0516 1-375 -79.100 24  MH15431A YP_001166108.1 394306 Crystal|NMR-2009-06-23
16 gi|6319258|ref|NP_009341.1| NAD-dependent (R,R)-butanediol dehydrogenase, catalyzes oxidation of (R,R)-2,3-butanediol to (3R)-acetoin, oxidation of meso-butanediol to (3S)-acetoin, and reduction of acetoin; enhances use of 2,3-butanediol as an aerobic carbon source; Bdh1p (YAL060W) [Saccharomyces cerevisiae] 382 JCSG0516 1-374 -79.200 23  MH15431A YP_001166108.1 394306 Crystal|NMR-2009-06-23
17 gi|6319259|ref|NP_009342.1| Protein of unknown function, localized in the nucleoplasm and the nucleolus, genetically interacts with MTR2 in 60S ribosomal protein subunit export; Ecm1p (YAL059W) [Saccharomyces cerevisiae] 212 JCSG0516 1-209 -10.800 SP18938A YP_808885.1 412031 Selected-2009-11-12
18 gi|6319260|ref|NP_009343.1|(removed signalp:1-19) Calnexin; integral membrane ER chaperone involved in folding and quality control of glycoproteins; chaperone activity is inhibited by Mpd1p, with which Cne1p interacts; 24% identical to mammalian calnexin; Ca+ binding not yet shown in yeast; Cne1p (YAL058W) [Saccharomyces cerevisiae] 483 JCSG0516 12-227 -68.300 25  KN.B21266A.CALR BC007911 429601 Purified-2014-04-01
19 gi|41629666|ref|NP_009345.2| Multistep regulator of cAMP-PKA signaling; inhibits PKA downstream of Gpa2p and Cyr1p, thereby increasing cAMP dependency; inhibits Ras activity through direct interactions with Ira1p/2p; regulated by G-alpha protein Gpa2p; homolog of Gpb1p; Gpb2p (YAL056W) [Saccharomyces cerevisiae] 880 JCSG0516 4-863 -19.000 11  SP13647T ZP_01959481.1 406843 Selected-2009-11-12
248-867 -59.800 14  RV3356A XM_002722628 423301 Purified-2012-08-23
20 gi|6319263|ref|NP_009346.1| Putative peroxisomal membrane protein required for import of peroxisomal proteins, functionally complements a Pichia pastoris pex22 mutation; Pex22p (YAL055W) [Saccharomyces cerevisiae] 180 JCSG0516 1-168 -8.390 SP16379A ZP_04008557.1 413838 Purified-2010-09-29


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]