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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 16082next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 PF10417.7; A4AVJ3_MARSH/157-196; C-terminal domain of 1-Cys peroxiredoxin 40 VFDB 1-40 -4.180 20  VFG000967(gi:15675354) (hylP) hyaluronidase, phage associated [Hyaluronidase (VF0246)] [Streptococcus pyogenes M1 GAS]
2 PF12574.6; SCA4_RICPR/92-337; 120 KDa Rickettsia surface antigen 246 VFDB 7-117 -5.960 13  VFG045557(gi:52842363) (lpg2149) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
3 PF09847.7; O29125_ARCFU/30-435; Membrane protein of 12 TMs 406 VFDB 216-373 -7.700 12  VFG045333(gi:588561366) (llsH) ABC transporter permease protein LlsH [LLS (VF0410)] [Listeria innocua SLCC6294]
4 PF00244.18; G1K9B0_ANOCA/9-229; 14-3-3 protein 221 VFDB 9-216 -5.310 10  VFG000381(gi:16082719) (lcrV) type III secretion system hydrophilic translocator, needle tip protein LcrV [TTSS (VF0140)] [Yersinia pestis CO92]
5 PF16998.3; W6RDF8_9RHIZ/37-150; 17 kDa outer membrane surface antigen 114 VFDB 50-113 -4.950 15  VFG043732(gi:23574038) (cdtA) cytolethal distending toxin A [CDT (VF0185)] [Escherichia coli O157:H str. 493/89]
6 PF00389.28; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 306 VFDB 71-248 -5.590 13  VFG001349(gi:22537330) (cpsD) CpsD autokinase [Capsule (VF0274)] [Streptococcus agalactiae 2603V/R]
7 PF02826.17; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 177 VFDB 41-162 -5.750 12  VFG001268(gi:15599420) (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
8 PF00198.21; A4ICH2_LEIIN/226-463; 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 238 VFDB 59-175 -6.640 12  VFG034754(gi:15802132) (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
9 PF16078.3; H6C9R5_EXODN/72-112; 2-oxoglutarate dehydrogenase N-terminus 41 VFDB 2-41 -3.530 22  VFG001293(gi:21282773) (hly/hla) Alpha-Hemolysin precursor [
10 PF04029.12; H1YDD2_9SPHI/8-231; 2-phosphosulpholactate phosphatase 224 VFDB 6-124 -6.240 VFG001225(gi:15595605) (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
11 PF16620.3; L5L3U3_PTEAL/250-410; Unstructured linker between I-set domains 2 and 3 on MYLCK 161 VFDB 1-161 -20.200 VFG000337(gi:16272928) (iga1) immunoglobin A1 protease [IgA1 protease (VF0045)] [Haemophilus influenzae Rd KW20]
48-161 -24.000 11  VFG000117(gi:15600446) (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
12 PF05635.9; K7WXD0_9NOST/8-110; 23S rRNA-intervening sequence protein 103 VFDB 12-102 -3.960 11  VFG041336(gi:52842660) (ankF/legA14/ceg31) Dot/Icm type IV secretion system effector AnkF/LegA14/Ceg31 [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
13 PF08521.8; B1Y781_LEPCP/20-172; Two-component sensor kinase N-terminal 153 VFDB 1-153 -5.010 11  VFG043518(gi:29134931) (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
14 PF08793.8; Q0E553_SFAVA/142-176; 2-cysteine adaptor domain 35 VFDB 3-34 -2.290 18  VFG043208(gi:123442799) (cheR) chemotaxis methyltransferase CheR [peritrichous flagella (AI145)] [Yersinia enterocolitica subsp. enterocolitica 8081]
15 PF11591.6; D8UJ95_VOLCA/1-34; Ferredoxin chloroplastic transit peptide 34 VFDB 18-29 -2.520 50  VFG000207(gi:15596909) (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
16 PF01257.17; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin 148 VFDB 9-148 -8.490 17  VFG002059(gi:15595271) (tagT) type six secretion associated protein TagT, ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
17 PF08975.8; B9JYZ4_AGRVS/31-145; Domain of unknown function (DUF1868 topsan) 115 VFDB 13-108 -4.580 VFG000304(gi:15645171) (cagD) type IV secretion system protein Cag24/CagD [Type IV secretion system (VF0060)] [Helicobacter pylori 26695]
18 PF03390.13; Q5WJJ9_BACSK/33-442; 2-hydroxycarboxylate transporter family 410 VFDB 36-305 -4.220 13  VFG000546(gi:16766191) (sipB/sspB) type III secretion system hydrophilic translocator, pore protein SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
19 PF03171.18; ACCO1_ARATH/158-259; 2OG-Fe(II) oxygenase superfamily 102 VFDB 15-102 -5.730 12  VFG000556(gi:16766201) (invB) type III secretion system protein InvB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
20 PF13532.4; D0N998_PHYIT/73-283; 2OG-Fe(II) oxygenase superfamily 211 VFDB 1-211 -8.800 14  VFG045594(gi:52842900) (legD1) Dot/Icm type IV secretion system effector LegD1 [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.