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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 16082next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 PF10417.7; A4AVJ3_MARSH/157-196; C-terminal domain of 1-Cys peroxiredoxin 40 PDB0516 1-40 -22.500 40  1xcc_A mol:protein length:220 1-Cys peroxiredoxin
2 PF12574.6; SCA4_RICPR/92-337; 120 KDa Rickettsia surface antigen 246 PDB0516 1-243 -102.000 74  4lq8_A mol:protein length:340 Sca-family protein
3 PF09847.7; O29125_ARCFU/30-435; Membrane protein of 12 TMs 406 PDB0516 28-297 -6.560 11  4xee_A mol:protein length:541 Neurotensin receptor type 1, Endolysin chimer
4 PF00244.18; G1K9B0_ANOCA/9-229; 14-3-3 protein 221 PDB0516 1-221 -133.000 72  3o8i_A mol:protein length:239 14-3-3 protein sigma
5 PF16998.3; W6RDF8_9RHIZ/37-150; 17 kDa outer membrane surface antigen 114 PDB0516 49-108 -8.370 13  1u34_A mol:protein length:119 Corticotropin releasing factor receptor 2
6 PF00389.28; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 306 PDB0516 1-304 -117.000 43  2g76_A mol:protein length:335 D-3-phosphoglycerate dehydrogenase
7 PF02826.17; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 177 PDB0516 1-177 -79.300 35  2gcg_A mol:protein length:330 Glyoxylate reductase/hydroxypyruvate reductas
8 PF00198.21; A4ICH2_LEIIN/226-463; 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 238 PDB0516 1-238 -123.000 50  3b8k_A mol:protein length:239 Dihydrolipoyllysine-residue acetyltransferase
9 PF16078.3; H6C9R5_EXODN/72-112; 2-oxoglutarate dehydrogenase N-terminus 41 PDB0516 1-41 -15.500 29  2jgd_A mol:protein length:933 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT
10 PF04029.12; H1YDD2_9SPHI/8-231; 2-phosphosulpholactate phosphatase 224 PDB0516 1-224 -86.200 31  1vr0_A mol:protein length:247 Probable 2-phosphosulfolactate phosphatase
11 PF16620.3; L5L3U3_PTEAL/250-410; Unstructured linker between I-set domains 2 and 3 on MYLCK 161 PDB0516 5-159 -11.900 5izt_A mol:protein length:396 Outer surface protein
37-160 -15.600 5fz2_A mol:protein length:904 ENVELOPE GLYCOPROTEIN B
12 PF05635.9; K7WXD0_9NOST/8-110; 23S rRNA-intervening sequence protein 103 PDB0516 1-103 -69.900 35  2gsc_A mol:protein length:128 Putative uncharacterized protein XCC0516
13 PF08521.8; B1Y781_LEPCP/20-172; Two-component sensor kinase N-terminal 153 PDB0516 1-153 -23.500 17  2kse_A mol:protein length:186 Sensor protein qseC
14 PF08793.8; Q0E553_SFAVA/142-176; 2-cysteine adaptor domain 35 PDB0516 7-35 -5.280 28  1jy4_A mol:protein length:35 B4DIMER
15 PF11591.6; D8UJ95_VOLCA/1-34; Ferredoxin chloroplastic transit peptide 34 PDB0516 1-28 -17.500 74  1fct_A mol:protein length:32 FERREDOXIN CHLOROPLASTIC TRANSIT PEPTIDE SEQU
16 PF01257.17; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin 148 PDB0516 1-148 -87.300 35  2fug_2 mol:protein length:181 NADH-quinone oxidoreductase chain 2
17 PF08975.8; B9JYZ4_AGRVS/31-145; Domain of unknown function (DUF1868 topsan) 115 PDB0516 1-114 -57.900 54  2fsq_A mol:protein length:243 Atu0111 protein
18 PF03390.13; Q5WJJ9_BACSK/33-442; 2-hydroxycarboxylate transporter family 410 PDB0516 1-410 -112.000 31  5a1s_A mol:protein length:448 CITRATE-SODIUM SYMPORTER
19 PF03171.18; ACCO1_ARATH/158-259; 2OG-Fe(II) oxygenase superfamily 102 PDB0516 1-102 -66.700 62  1w9y_A mol:protein length:319 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 1
20 PF13532.4; D0N998_PHYIT/73-283; 2OG-Fe(II) oxygenase superfamily 211 PDB0516 1-211 -83.800 24  4nig_A mol:protein length:205 Alpha-ketoglutarate-dependent dioxygenase Alk


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;