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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 16082next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 PF10417.7; A4AVJ3_MARSH/157-196; C-terminal domain of 1-Cys peroxiredoxin 40 JCSG0516 1-40 -13.700 37  TM0807 TM0807 282677 Purified-2001-04-19
2 PF12574.6; SCA4_RICPR/92-337; 120 KDa Rickettsia surface antigen 246 JCSG0516 8-236 -5.850 GS13601A YP_213392.1 385039 Purified-2008-05-17
3 PF09847.7; O29125_ARCFU/30-435; Membrane protein of 12 TMs 406 JCSG0516 6-406 -29.800 12  TM0794 TM0794 282664 Purified-2004-02-02
4 PF00244.18; G1K9B0_ANOCA/9-229; 14-3-3 protein 221 JCSG0516 1-221 -132.000 96  WT2292C.YWHAQ BC093019 422862 Crystal|NMR-2011-09-30
5 PF16998.3; W6RDF8_9RHIZ/37-150; 17 kDa outer membrane surface antigen 114 JCSG0516 8-111 -31.300 11  SP18527B ZP_03311701.1 410654 Purified-2010-09-29
6 PF00389.28; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 306 JCSG0516 1-297 -114.000 42  TM1401 TM1401 283262 Purified-2002-01-08
7 PF02826.17; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 177 JCSG0516 1-177 -67.100 34  TM1401 TM1401 283262 Purified-2002-01-08
8 PF00198.21; A4ICH2_LEIIN/226-463; 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 238 JCSG0516 4-231 -13.200 12  XB5742A NP_812031.1 358880 Diffraction|HSQC-2005-09-07
9 PF16078.3; H6C9R5_EXODN/72-112; 2-oxoglutarate dehydrogenase N-terminus 41 JCSG0516 7-41 -3.870 14  MA0557A NP_004332.2 400202 Selected-2008-12-22
10 PF04029.12; H1YDD2_9SPHI/8-231; 2-phosphosulpholactate phosphatase 224 JCSG0516 1-224 -86.700 30  TB0797A 15026306 357129 PDB-2005-01-26
11 PF16620.3; L5L3U3_PTEAL/250-410; Unstructured linker between I-set domains 2 and 3 on MYLCK 161 JCSG0516 1-161 -21.600 SP18146A NP_345481.1 413783 Selected-2009-11-12
37-161 -30.400 15  SP2802D ZP_02044512.1 406565 Selected-2009-11-12
12 PF05635.9; K7WXD0_9NOST/8-110; 23S rRNA-intervening sequence protein 103 JCSG0516 1-101 -24.800 20  PC05635E NP_809265.1 361321 PDB-2007-10-18
13 PF08521.8; B1Y781_LEPCP/20-172; Two-component sensor kinase N-terminal 153 JCSG0516 28-91 -7.130 16  FM11814A YP_316020.1 378158 Purified-2007-08-13
14 PF08793.8; Q0E553_SFAVA/142-176; 2-cysteine adaptor domain 35 JCSG0516 9-34 -4.340 23  SP17786A ZP_02423032.1 411250 Selected-2009-11-12
15 PF11591.6; D8UJ95_VOLCA/1-34; Ferredoxin chloroplastic transit peptide 34 JCSG0516 16-26 -4.920 63  TM1829 TM1829 283682 Purified-2001-11-28
16 PF01257.17; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin 148 JCSG0516 1-148 -71.100 34  TM0012 TM0012 281893 Purified-2001-08-29
17 PF08975.8; B9JYZ4_AGRVS/31-145; Domain of unknown function (DUF1868 topsan) 115 JCSG0516 16-109 -5.480 17  TM1860 TM1860 283712 Purified-2001-02-15
18 PF03390.13; Q5WJJ9_BACSK/33-442; 2-hydroxycarboxylate transporter family 410 JCSG0516 180-245 -5.620 16  SP2485D NP_371294.1 413704 Crystal|NMR-2012-02-26
19 PF03171.18; ACCO1_ARATH/158-259; 2OG-Fe(II) oxygenase superfamily 102 JCSG0516 1-102 -38.200 32  MI15887P NP_718175.1 398694 PDB-2010-08-27
20 PF13532.4; D0N998_PHYIT/73-283; 2OG-Fe(II) oxygenase superfamily 211 JCSG0516 1-211 -24.200 19  MA4241A XP_001471779.1 400140 Cloned-2009-03-24


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]