current user: public

anford Burnham Prebys Medical Discovery Institute
Please be advised that due to the planned maintenance our websites might be temporarily unavailable on December 17-18, 2018. We apologise for the inconvenience that this may cause.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 51500next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 2N4O Entity 1(prereleased) 95 NEW_HUMAN_DOMAINS 71-95 -6.210 32  sp|Q9ULG6|CCPG1_HUMAN Cell cycle progression protein 1 OS=Homo sapiens GN=CCPG1 PE=1 SV=3 (Range: 629-736)
2 2N3I Entity 1(prereleased) 94 NEW_HUMAN_DOMAINS 23-89 -5.430 10  sp|O15230|LAMA5_HUMAN Laminin subunit alpha-5 OS=Homo sapiens GN=LAMA5 PE=1 SV=8 (Range: 897-1061)
3 2NCS Entity 1(prereleased) 36 NEW_HUMAN_DOMAINS 7-35 -4.190 20  sp|Q99460|PSMD1_HUMAN 26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens GN=PSMD1 PE=1 SV=2 (Range: 766-817)
4 2N98 Entity 1(prereleased) 90 NEW_HUMAN_DOMAINS 31-90 -5.670 16  sp|P04035|HMDH_HUMAN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Homo sapiens GN=HMGCR PE=1 SV=1 (Range: 280-425)
5 2N2G Entity 1(prereleased) 33 NEW_HUMAN_DOMAINS 4-28 -5.410 24  tr|E7ES18|E7ES18_HUMAN Uncharacterized protein OS=Homo sapiens GN=PKD1 PE=4 SV=1 (Range: 593-656)
6 2N64 Entity 1(prereleased) 75 NEW_HUMAN_DOMAINS 16-73 -7.140 22  sp|Q14687|GSE1_HUMAN Genetic suppressor element 1 OS=Homo sapiens GN=GSE1 PE=1 SV=3 (Range: 1142-1217)
7 4S3U Entity 1(prereleased) 360 NEW_HUMAN_DOMAINS 91-197 -6.470 11  sp|Q5XPI4|RN123_HUMAN E3 ubiquitin-protein ligase RNF123 OS=Homo sapiens GN=RNF123 PE=1 SV=1 (Range: 519-638)
8 2N6O Entity 1(prereleased) 35 NEW_HUMAN_DOMAINS 1-30 -4.210 13  sp|P48357|LEPR_HUMAN Leptin receptor OS=Homo sapiens GN=LEPR PE=1 SV=2 (Range: 873-944)
9 2NAZ Entity 1(prereleased) 112 NEW_HUMAN_DOMAINS 37-99 -5.820 15  sp|O75592|MYCB2_HUMAN Probable E3 ubiquitin-protein ligase MYCBP2 OS=Homo sapiens GN=MYCBP2 PE=1 SV=3 (Range: 3973-4080)
10 3JB5 Entity 1(prereleased) 315 NEW_HUMAN_DOMAINS 1-116 -5.670 12  sp|Q8ND23|LR16B_HUMAN Leucine-rich repeat-containing protein 16B OS=Homo sapiens GN=LRRC16B PE=2 SV=2 (Range: 1-120)
11 5A6D Entity 1(prereleased) 249 NEW_HUMAN_DOMAINS 11-95 -6.140 11  sp|Q8IYD9|CR054_HUMAN Uncharacterized protein C18orf54 OS=Homo sapiens GN=C18orf54 PE=2 SV=1 (Range: 43-141)
12 5A6Q Entity 1(prereleased) 114 NEW_HUMAN_DOMAINS 101-114 -4.860 35  sp|A1A5C7|S22AN_HUMAN Solute carrier family 22 member 23 OS=Homo sapiens GN=SLC22A23 PE=2 SV=2 (Range: 79-162)
13 5A7D Entity 1(prereleased) 382 NEW_HUMAN_DOMAINS 185-306 -45.300 13  sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=3 (Range: 717-845)
14 5A7D Entity 2(prereleased) 341 NEW_HUMAN_DOMAINS 186-310 -20.900 tr|D6RE95|D6RE95_HUMAN Uncharacterized protein OS=Homo sapiens GN=RAP1GDS1 PE=4 SV=1 (Range: 1-119)
15 5A7E Entity 1(prereleased) 496 NEW_HUMAN_DOMAINS 65-241 -4.880 16  sp|Q4KMG0|CDON_HUMAN Cell adhesion molecule-related/down-regulated by oncogenes OS=Homo sapiens GN=CDON PE=1 SV=2 (Range: 989-1164)
16 5A8C Entity 1(prereleased) 320 NEW_HUMAN_DOMAINS 98-205 -5.150 sp|O43593|HAIR_HUMAN Protein hairless OS=Homo sapiens GN=HR PE=1 SV=5 (Range: 837-958)
17 5A8F Entity 1(prereleased) 219 NEW_HUMAN_DOMAINS 83-219 -5.860 sp|Q8NBJ9|SIDT2_HUMAN SID1 transmembrane family member 2 OS=Homo sapiens GN=SIDT2 PE=1 SV=2 (Range: 19-169)
18 5A8F Entity 3(prereleased) 258 NEW_HUMAN_DOMAINS 179-210 -6.390 18  sp|P78312|F193A_HUMAN Protein FAM193A OS=Homo sapiens GN=FAM193A PE=1 SV=2 (Range: 409-480)
19 5A8F Entity 2(prereleased) 189 NEW_HUMAN_DOMAINS 35-188 -7.990 sp|Q8N6T0|CK080_HUMAN Putative uncharacterized protein C11orf80 OS=Homo sapiens GN=C11orf80 PE=2 SV=1 (Range: 1-247)
20 5A8K Entity 1(prereleased) 550 NEW_HUMAN_DOMAINS 63-238 -5.800 11  sp|Q9C0C9|UBE2O_HUMAN Ubiquitin-conjugating enzyme E2 O OS=Homo sapiens GN=UBE2O PE=1 SV=3 (Range: 116-311)


FFAS is supported by the NIH grant R01-GM087218-01
1 2 0 2 5 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]