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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 7012next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 sp|A0AUZ9|CB067_HUMAN Uncharacterized protein C2orf67 OS=Homo sapiens GN=C2orf67 PE=1 SV=2 (Range: 142-330) 189 PDB0516 70-127 -7.040 3u1d_A mol:protein length:151 uncharacterized protein
2 sp|A0AUZ9|CB067_HUMAN Uncharacterized protein C2orf67 OS=Homo sapiens GN=C2orf67 PE=1 SV=2 (Range: 362-412) 51 PDB0516 12-49 -5.920 15  3bj4_A mol:protein length:49 Potassium voltage-gated channel subfamily KQT
3 sp|A0AVF1|TTC26_HUMAN Tetratricopeptide repeat protein 26 OS=Homo sapiens GN=TTC26 PE=2 SV=1 (Range: 486-554) 69 PDB0516 1-23 -6.940 30  1oot_A mol:protein length:60 Hypothetical 40.4 kDa protein in PES4-HIS2 in
4 tr|A0AVG2|A0AVG2_HUMAN TRPM8 protein OS=Homo sapiens GN=TRPM8 PE=2 SV=1 (Range: 1-215) 215 PDB0516 6-187 -7.740 16  4mum_A mol:protein length:207 Mitochondrial 5` nucleotidase
5 tr|A0AVG2|A0AVG2_HUMAN TRPM8 protein OS=Homo sapiens GN=TRPM8 PE=2 SV=1 (Range: 240-290) 51 PDB0516 19-51 -5.310 18  3j45_E mol:protein length:56 Preprotein translocase subunit SecE
6 tr|A0AVG2|A0AVG2_HUMAN TRPM8 protein OS=Homo sapiens GN=TRPM8 PE=2 SV=1 (Range: 311-360) 50 PDB0516 6-40 -6.420 28  2kyu_A mol:protein length:67 Histone-lysine N-methyltransferase MLL
7 sp|A0AVI2|FR1L5_HUMAN Fer-1-like protein 5 OS=Homo sapiens GN=FER1L5 PE=2 SV=2 (Range: 431-614) 184 PDB0516 2-178 -7.760 11  2iz5_A mol:protein length:176 MOCO CARRIER PROTEIN
8 sp|A0AVI2|FR1L5_HUMAN Fer-1-like protein 5 OS=Homo sapiens GN=FER1L5 PE=2 SV=2 (Range: 1641-1750) 110 PDB0516 2-86 -9.220 15  3c0u_A mol:protein length:183 Uncharacterized protein yaeQ
9 sp|A0AVI2|FR1L5_HUMAN Fer-1-like protein 5 OS=Homo sapiens GN=FER1L5 PE=2 SV=2 (Range: 2018-2093) 76 PDB0516 1-71 -6.380 15  3fef_A mol:protein length:450 Putative glucosidase lplD, ALPHA-GALACTURONID
10 sp|A0AVK6|E2F8_HUMAN Transcription factor E2F8 OS=Homo sapiens GN=E2F8 PE=1 SV=1 (Range: 470-543) 74 PDB0516 22-59 -7.720 18  3pge_A mol:protein length:200 SUMO-modified proliferating cell nuclear anti
11 sp|A0JNW5|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapiens GN=UHRF1BP1L PE=1 SV=2 (Range: 117-259) 143 PDB0516 8-99 -7.990 2kd7_A mol:protein length:159 Putative chitobiase
12 sp|A0JNW5|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapiens GN=UHRF1BP1L PE=1 SV=2 (Range: 309-401) 93 PDB0516 2-93 -7.890 17  3bkw_A mol:protein length:243 S-adenosylmethionine dependent methyltransfer
13 sp|A0JNW5|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapiens GN=UHRF1BP1L PE=1 SV=2 (Range: 488-662) 175 PDB0516 7-145 -7.000 12  3v2u_C mol:protein length:520 Protein GAL3
14 sp|A0JNW5|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapiens GN=UHRF1BP1L PE=1 SV=2 (Range: 1275-1361) 87 PDB0516 33-85 -7.560 24  4eak_B mol:protein length:72 5`-AMP-activated protein kinase subunit beta-
15 sp|A0PJM3|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P PE=5 SV=2 (Range: 195-290) 96 PDB0516 3-77 -15.100 2k0n_A mol:protein length:85 Mediator of RNA polymerase II transcription s
16 sp|A0PJM3|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P PE=5 SV=2 (Range: 322-408) 87 PDB0516 1-59 -15.300 16  2xcm_E mol:protein length:74 RAR1
17 sp|A0PJW6|TM223_HUMAN Transmembrane protein 223 OS=Homo sapiens GN=TMEM223 PE=1 SV=1 (Range: 119-202) 84 PDB0516 1-82 -6.320 17  3mwb_A mol:protein length:313 Prephenate dehydratase
18 sp|A0PJX8|TMM82_HUMAN Transmembrane protein 82 OS=Homo sapiens GN=TMEM82 PE=2 SV=2 (Range: 97-285) 189 PDB0516 37-108 -7.780 1zu1_A mol:protein length:127 RNA binding protein ZFa
19 sp|A0PJY2|FEZF1_HUMAN Fez family zinc finger protein 1 OS=Homo sapiens GN=FEZF1 PE=2 SV=1 (Range: 106-243) 138 PDB0516 19-133 -7.500 13  3omd_A mol:protein length:145 Uncharacterized protein
20 sp|A0ZSE6|CC50C_HUMAN Cell cycle control protein 50C OS=Homo sapiens GN=TMEM30C PE=2 SV=2 (Range: 58-113) 56 PDB0516 3-42 -5.410 20  1x0g_A mol:protein length:112 IscA


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]