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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2171next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15675949|ref|NP_273067.1| putative acetyltransferase (NMB0001) [Neisseria meningitidis MC58] 163 PDB0516 8-162 -34.200 19  2a4n_A mol:protein length:182 aac(6`)-Ii
2 gi|15675950|ref|NP_273068.1|(removed signalp:1-36) hypothetical protein (NMB0002) [Neisseria meningitidis MC58] 95 PDB0516 4-90 -24.300 15  3wuq_A mol:protein length:283 Cytoplasmic dynein 1 heavy chain 1
3 gi|15675951|ref|NP_273069.1| glutamyl-tRNA synthetase (NMB0003) [Neisseria meningitidis MC58] 464 PDB0516 2-464 -142.000 51  4g6z_A mol:protein length:490 Glutamate-tRNA ligase
4 gi|15675952|ref|NP_273070.1|(removed signalp:1-37) EpiH/GdmH-related protein (NMB0004) [Neisseria meningitidis MC58] 177 PDB0516 11-132 -24.500 18  3ca8_A mol:protein length:266 Protein ydcF
5 gi|15675953|ref|NP_273071.1| arsenate reductase (NMB0005) [Neisseria meningitidis MC58] 117 PDB0516 1-117 -77.600 52  3rdw_A mol:protein length:121 Putative arsenate reductase
6 gi|15675954|ref|NP_273072.1|(removed signalp:1-22) thioredoxin-related protein (NMB0006) [Neisseria meningitidis MC58] 138 PDB0516 1-138 -77.700 100  3raz_A mol:protein length:151 Thioredoxin-related protein
7 gi|15675955|ref|NP_273073.1| ABC transporter ATP-binding protein (NMB0007) [Neisseria meningitidis MC58] 216 PDB0516 1-216 -81.600 36  2pcj_A mol:protein length:224 Lipoprotein-releasing system ATP-binding prot
8 gi|15675956|ref|NP_273074.1| putative cell division protein FtsX (NMB0008) [Neisseria meningitidis MC58] 305 PDB0516 51-161 -28.900 12  4n8n_A mol:protein length:115 Cell division protein FtsX
9 gi|15675957|ref|NP_273075.1| BolA/YrbA family protein (NMB0009) [Neisseria meningitidis MC58] 82 PDB0516 1-82 -55.000 27  1ny8_A mol:protein length:97 Protein yrbA
10 gi|15675958|ref|NP_273076.1| phosphoglycerate kinase (NMB0010) [Neisseria meningitidis MC58] 403 PDB0516 1-403 -118.000 59  1zmr_A mol:protein length:387 Phosphoglycerate kinase
11 gi|15675959|ref|NP_273077.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (NMB0011) [Neisseria meningitidis MC58] 417 PDB0516 1-417 -125.000 58  2rl1_A mol:protein length:424 UDP-N-acetylglucosamine 1-carboxyvinyltransfe
12 gi|15675960|ref|NP_273078.1| hypothetical protein (NMB0012) [Neisseria meningitidis MC58] 323 PDB0516 4-254 -7.160 11  3ug9_A mol:protein length:333 Archaeal-type opsin 1, Archaeal-type opsin 2
13 gi|15675961|ref|NP_273079.1| hypothetical protein (NMB0013) [Neisseria meningitidis MC58] 149 PDB0516 2-149 -7.320 12  3v2w_A mol:protein length:520 Sphingosine 1-phosphate receptor 1, Lysozyme
14 gi|15675962|ref|NP_273080.1| 3-deoxy-D-manno-octulosonic-acid transferase (NMB0014) [Neisseria meningitidis MC58] 423 PDB0516 21-413 -92.300 23  2xci_A mol:protein length:374 3-DEOXY-D-MANNO-2-OCTULOSONIC ACID TRANSFERAS
15 gi|15675963|ref|NP_273081.1| 6-phosphogluconate dehydrogenase (NMB0015) [Neisseria meningitidis MC58] 482 PDB0516 2-482 -138.000 62  1pgn_A mol:protein length:482 6-PHOSPHOGLUCONATE DEHYDROGENASE
16 gi|15675964|ref|NP_273082.1| hypothetical protein (NMB0016) [Neisseria meningitidis MC58] 78 PDB0516 13-73 -7.030 13  3ir4_A mol:protein length:218 Glutaredoxin 2
17 gi|15675965|ref|NP_273083.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (NMB0017) [Neisseria meningitidis MC58] 307 PDB0516 1-306 -119.000 48  4mdt_A mol:protein length:305 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosam
18 gi|15675966|ref|NP_273084.1|(removed signalp:1-27) pilin PilE (NMB0018) [Neisseria meningitidis MC58] 143 PDB0516 3-143 -88.900 98  4v1j_A mol:protein length:142 FIMBRIAL PROTEIN
19 gi|77358699|ref|YP_338284.1| pilS cassette (NMB0019) [Neisseria meningitidis MC58] 136 PDB0516 1-123 -69.200 78  4xnp_A mol:protein length:137 Major pilin PilE
20 gi|77358700|ref|YP_338285.1| pilS cassette (NMB0020) [Neisseria meningitidis MC58] 124 PDB0516 1-123 -70.900 68  4xnp_A mol:protein length:137 Major pilin PilE


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]