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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4372next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15607143|ref|NP_214515.1| chromosomal replication initiation protein (Rv0001) [Mycobacterium tuberculosis H37Rv] 507 VFDB 204-422 -8.220 16  VFG002380(gi:15611004) (eccA1) ESX-1 type VII secretion system AAA+ ATPase EccA1 [ESX-1 (VF0315)] [Mycobacterium tuberculosis H37Rv]
2 gi|15607144|ref|NP_214516.1| DNA polymerase III subunit beta (Rv0002) [Mycobacterium tuberculosis H37Rv] 402 VFDB 177-357 -4.700 10  VFG000005(gi:33593643) (fimX) fimbrial protein [Fimbriae (VF0031)] [Bordetella pertussis Tohama I]
3 gi|15607145|ref|NP_214517.1| recombination protein F (Rv0003) [Mycobacterium tuberculosis H37Rv] 385 VFDB 3-353 -12.700 16  VFG037118(gi:15676638) (recN) DNA repair protein RecN [RecN (VF0457)] [Neisseria meningitidis MC58]
4 gi|15607146|ref|NP_214518.1| hypothetical protein (Rv0004) [Mycobacterium tuberculosis H37Rv] 187 VFDB 1-180 -6.770 12  VFG000046(gi:33593242) (bscP) Bordetella Bsc type III secretion system protein BscP [TTSS (VF0035)] [Bordetella pertussis Tohama I]
5 gi|15607147|ref|NP_214519.1| DNA gyrase subunit B (Rv0005) [Mycobacterium tuberculosis H37Rv] 714 VFDB 42-616 -6.860 13  VFG000434(gi:17233482) (pefC) plasmid-encoded fimbriae usher protein PefC [Pef (VF0104)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
6 gi|15607148|ref|NP_214520.1| DNA gyrase subunit A (Rv0006) [Mycobacterium tuberculosis H37Rv] 838 VFDB 51-775 -7.400 VFG001960(gi:15792750) (Cj1432c) sugar transferase [Capsule (VF0323)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
7 gi|15607149|ref|NP_214521.1| hypothetical protein (Rv0007) [Mycobacterium tuberculosis H37Rv] 304 VFDB 200-303 -8.610 10  VFG045338(gi:588561371) (llsP) CAAX amino terminal protease LlsP [LLS (VF0410)] [Listeria innocua SLCC6294]
8 gi|15607150|ref|NP_214522.1| hypothetical protein (Rv0008c) [Mycobacterium tuberculosis H37Rv] 145 VFDB 1-102 -6.170 10  VFG001290(gi:21284280) (clfB) Clumping factor B, adhesin [Clumping factor (VF0004)] [Staphylococcus aureus subsp. aureus MW2]
9 gi|15607151|ref|NP_214523.1| iron-regulated peptidyl-prolyl cis-trans isomerase A (Rv0009) [Mycobacterium tuberculosis H37Rv] 182 VFDB 1-182 -105.000 53  VFG041304(gi:52842179) (lirB) Dot/Icm type IV secretion system effector LirB [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
10 gi|15607152|ref|NP_214524.1| hypothetical protein (Rv0010c) [Mycobacterium tuberculosis H37Rv] 141 VFDB 37-133 -6.780 23  VFG002493(gi:53717668) (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
11 gi|15607153|ref|NP_214525.1| putative septation inhibitor protein (Rv0011c) [Mycobacterium tuberculosis H37Rv] 93 VFDB 9-91 -8.600 17  VFG045345(gi:28898385) (VP1611) multivalent adhesion molecule MAM7 [MAM7 (VF0512)] [Vibrio parahaemolyticus RIMD 2210633]
12 gi|15607154|ref|NP_214526.1| hypothetical protein (Rv0012) [Mycobacterium tuberculosis H37Rv] 262 VFDB 26-240 -8.000 10  VFG002192(gi:29376363) (fsrC) histidine kinase, putative [Fsr (VF0360)] [Enterococcus faecalis V583]
13 gi|57116682|ref|YP_177615.1| para-aminobenzoate synthase component II (Rv0013) [Mycobacterium tuberculosis H37Rv] 232 VFDB 1-192 -46.400 25  VFG015515(gi:15599409) (phzE1) phenazine biosynthesis protein PhzE [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
14 gi|15607156|ref|NP_214528.1| transmembrane serine/threonine-protein kinase B PKNB (protein kinase B) (STPK B) (Rv0014c) [Mycobacterium tuberculosis H37Rv] 626 VFDB 5-626 -122.000 20  VFG002060(gi:15595272) (ppkA) serine/threonine protein kinase PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
15 gi|15607157|ref|NP_214529.1| transmembrane serine/threonine-protein kinase A PKNA (protein kinase A) (STPK A) (Rv0015c) [Mycobacterium tuberculosis H37Rv] 431 VFDB 8-431 -97.900 25  VFG002060(gi:15595272) (ppkA) serine/threonine protein kinase PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
16 gi|15607158|ref|NP_214530.1|(removed signalp:1-30) penicillin-binding protein PbpA (Rv0016c) [Mycobacterium tuberculosis H37Rv] 461 VFDB 111-186 -4.650 19  VFG000206(gi:15596908) (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
17 gi|15607159|ref|NP_214531.1|(removed signalp:1-35) cell division protein RodA (Rv0017c) [Mycobacterium tuberculosis H37Rv] 434 VFDB 49-390 -7.260 10  VFG011505(gi:17987609) (lpsA) glycosyltransferase [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M]
18 gi|15607160|ref|NP_214532.1| serine/threonine phosphatase (Rv0018c) [Mycobacterium tuberculosis H37Rv] 514 VFDB 1-239 -81.900 31  VFG002061(gi:15595273) (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
1-423 -35.800 10  VFG041258(gi:52840933) (lem3) Dot/Icm type IV secretion system effector Lem3, Dephosphoryl-cholinase relieving the AnkX-mediated modification on Rab1 [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
19 gi|15607161|ref|NP_214533.1| hypothetical protein (Rv0019c) [Mycobacterium tuberculosis H37Rv] 155 VFDB 30-153 -16.900 23  VFG002139(gi:15605397) (cdsD) Type III secretion system inner membrane ring complex protein CdsD [TTSS (VF0344)] [Chlamydia trachomatis D/UW-3/CX]
64-155 -24.700 15  VFG000403(gi:16082741) (yscD) type III secretion system outer MS ring protein YscD [TTSS (VF0140)] [Yersinia pestis CO92]
20 gi|15607162|ref|NP_214534.1| hypothetical protein (Rv0020c) [Mycobacterium tuberculosis H37Rv] 527 VFDB 1-524 -18.400 12  VFG002139(gi:15605397) (cdsD) Type III secretion system inner membrane ring complex protein CdsD [TTSS (VF0344)] [Chlamydia trachomatis D/UW-3/CX]
439-527 -21.300 27  VFG002080(gi:15600883) (vasC) type VI secretion system protein VasC [T6SS (VF0335)] [Vibrio cholerae O1 biovar El Tor str. N16961]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]