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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4372next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15607143|ref|NP_214515.1| chromosomal replication initiation protein (Rv0001) [Mycobacterium tuberculosis H37Rv] 507 PDB0516 12-507 -118.000 31  2z4r_A mol:protein length:440 Chromosomal replication initiator protein dna
2 gi|15607144|ref|NP_214516.1| DNA polymerase III subunit beta (Rv0002) [Mycobacterium tuberculosis H37Rv] 402 PDB0516 1-402 -116.000 100  3p16_A mol:protein length:408 DNA polymerase III subunit beta
3 gi|15607145|ref|NP_214517.1| recombination protein F (Rv0003) [Mycobacterium tuberculosis H37Rv] 385 PDB0516 1-383 -112.000 32  2o5v_A mol:protein length:359 DNA replication and repair protein recF
4 gi|15607146|ref|NP_214518.1| hypothetical protein (Rv0004) [Mycobacterium tuberculosis H37Rv] 187 PDB0516 71-180 -8.100 13  2ig3_A mol:protein length:127 Group III truncated haemoglobin
5 gi|15607147|ref|NP_214519.1| DNA gyrase subunit B (Rv0005) [Mycobacterium tuberculosis H37Rv] 714 PDB0516 29-713 -191.000 47  4juo_C mol:protein length:670 DNA topoisomerase 4 subunit B
6 gi|15607148|ref|NP_214520.1| DNA gyrase subunit A (Rv0006) [Mycobacterium tuberculosis H37Rv] 838 PDB0516 1-502 -154.000 99  3ifz_A mol:protein length:508 DNA gyrase subunit A
37-820 -130.000 34  1zvu_A mol:protein length:716 Topoisomerase IV subunit A
7 gi|15607149|ref|NP_214521.1| hypothetical protein (Rv0007) [Mycobacterium tuberculosis H37Rv] 304 PDB0516 205-293 -9.750 16  2q67_A mol:protein length:114 Potassium channel protein
8 gi|15607150|ref|NP_214522.1| hypothetical protein (Rv0008c) [Mycobacterium tuberculosis H37Rv] 145 PDB0516 1-86 -8.270 18  3d3y_A mol:protein length:425 Uncharacterized protein
9 gi|15607151|ref|NP_214523.1| iron-regulated peptidyl-prolyl cis-trans isomerase A (Rv0009) [Mycobacterium tuberculosis H37Rv] 182 PDB0516 1-182 -118.000 99  1w74_A mol:protein length:191 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A
10 gi|15607152|ref|NP_214524.1| hypothetical protein (Rv0010c) [Mycobacterium tuberculosis H37Rv] 141 PDB0516 43-141 -8.190 4chj_A mol:protein length:164 IMC SUB-COMPARTMENT PROTEIN ISP3
11 gi|15607153|ref|NP_214525.1| putative septation inhibitor protein (Rv0011c) [Mycobacterium tuberculosis H37Rv] 93 PDB0516 1-93 -70.900 100  2mmu_A mol:protein length:101 Cell division protein CrgA
12 gi|15607154|ref|NP_214526.1| hypothetical protein (Rv0012) [Mycobacterium tuberculosis H37Rv] 262 PDB0516 86-260 -56.900 28  3gmg_A mol:protein length:170 Uncharacterized protein Rv1825/MT1873
13 gi|57116682|ref|YP_177615.1| para-aminobenzoate synthase component II (Rv0013) [Mycobacterium tuberculosis H37Rv] 232 PDB0516 2-192 -96.400 42  1qdl_B mol:protein length:195 PROTEIN (ANTHRANILATE SYNTHASE (TRPG-SUBUNIT)
2-232 -26.500 21  2vxo_A mol:protein length:697 GMP SYNTHASE [GLUTAMINE-HYDROLYZING]
14 gi|15607156|ref|NP_214528.1| transmembrane serine/threonine-protein kinase B PKNB (protein kinase B) (STPK B) (Rv0014c) [Mycobacterium tuberculosis H37Rv] 626 PDB0516 1-308 -118.000 100  1mru_A mol:protein length:311 Probable serine/threonine-protein kinase pknB
1-415 -65.500 15  5ckw_B mol:protein length:451 LegK4
355-626 -61.500 100  2kui_A mol:protein length:275 Serine/threonine-protein kinase pknB
15 gi|15607157|ref|NP_214529.1| transmembrane serine/threonine-protein kinase A PKNA (protein kinase A) (STPK A) (Rv0015c) [Mycobacterium tuberculosis H37Rv] 431 PDB0516 1-336 -122.000 100  4x3f_B mol:protein length:337 Serine/threonine-protein kinase PknA
1-429 -76.200 16  5ckw_B mol:protein length:451 LegK4
16 gi|15607158|ref|NP_214530.1|(removed signalp:1-30) penicillin-binding protein PbpA (Rv0016c) [Mycobacterium tuberculosis H37Rv] 461 PDB0516 1-461 -155.000 99  3lo7_A mol:protein length:483 Penicillin-binding protein A
17 gi|15607159|ref|NP_214531.1|(removed signalp:1-35) cell division protein RodA (Rv0017c) [Mycobacterium tuberculosis H37Rv] 434 PDB0516 327-406 -7.990 14  2maw_A mol:protein length:137 Neuronal acetylcholine receptor subunit alpha
18 gi|15607160|ref|NP_214532.1| serine/threonine phosphatase (Rv0018c) [Mycobacterium tuberculosis H37Rv] 514 PDB0516 1-240 -98.200 100  2cm1_A mol:protein length:260 SERINE THREONINE PROTEIN PHOSPHATASE PSTP
19 gi|15607161|ref|NP_214533.1| hypothetical protein (Rv0019c) [Mycobacterium tuberculosis H37Rv] 155 PDB0516 51-153 -51.800 36  2xt9_B mol:protein length:115 PUTATIVE SIGNAL TRANSDUCTION PROTEIN GARA
20 gi|15607162|ref|NP_214534.1| hypothetical protein (Rv0020c) [Mycobacterium tuberculosis H37Rv] 527 PDB0516 1-132 -48.400 100  2lc0_A mol:protein length:132 Putative uncharacterized protein TB39.8
375-525 -49.800 90  3oun_A mol:protein length:157 Putative uncharacterized protein TB39.8


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]