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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4372next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15607143|ref|NP_214515.1| chromosomal replication initiation protein (Rv0001) [Mycobacterium tuberculosis H37Rv] 507 JCSG0516 7-502 -112.000 28  C.LS21333A NP_418828.1 430427 Purified-2014-07-08
2 gi|15607144|ref|NP_214516.1| DNA polymerase III subunit beta (Rv0002) [Mycobacterium tuberculosis H37Rv] 402 JCSG0516 9-402 -107.000 48  MH15440E NP_599254.1 394276 Crystal|NMR-2009-04-01
3 gi|15607145|ref|NP_214517.1| recombination protein F (Rv0003) [Mycobacterium tuberculosis H37Rv] 385 JCSG0516 1-353 -21.600 12  NT12358C DHAF_12NOV03_CONTIG1086_REVISED_GENE3509 378730 Purified-2008-01-24
1-383 -14.200 13  NT10183B NP_661802.1 378684 Purified-2007-09-04
4 gi|15607146|ref|NP_214518.1| hypothetical protein (Rv0004) [Mycobacterium tuberculosis H37Rv] 187 JCSG0516 12-180 -72.700 24  NN16164A YP_908867.1 400955 Cloned-2009-07-10
5 gi|15607147|ref|NP_214519.1| DNA gyrase subunit B (Rv0005) [Mycobacterium tuberculosis H37Rv] 714 JCSG0516 49-714 -196.000 53  TM0833 TM0833 282703 Purified-2005-04-05
6 gi|15607148|ref|NP_214520.1| DNA gyrase subunit A (Rv0006) [Mycobacterium tuberculosis H37Rv] 838 JCSG0516 13-820 -201.000 42  TM1084 TM1084 282951 Purified-2001-04-24
7 gi|15607149|ref|NP_214521.1| hypothetical protein (Rv0007) [Mycobacterium tuberculosis H37Rv] 304 JCSG0516 2-188 -9.830 SP2363E ZP_02069969.1 409482 Purified-2010-09-29
2-243 -9.610 RF20622A.ZCCHC8 BC065918 421231 Purified-2010-12-01
8 gi|15607150|ref|NP_214522.1| hypothetical protein (Rv0008c) [Mycobacterium tuberculosis H37Rv] 145 JCSG0516 1-81 -8.710 11  GS13671A YP_193568.1 384390 Selected-2007-09-11
9 gi|15607151|ref|NP_214523.1| iron-regulated peptidyl-prolyl cis-trans isomerase A (Rv0009) [Mycobacterium tuberculosis H37Rv] 182 JCSG0516 1-181 -69.000 40  C.MS20674A PPIL2-2-K006 423704 Purified-2011-07-06
10 gi|15607152|ref|NP_214524.1| hypothetical protein (Rv0010c) [Mycobacterium tuberculosis H37Rv] 141 JCSG0516 1-132 -11.500 10  SP18685A YP_001298424.1 409622 Purified-2010-09-29
11 gi|15607153|ref|NP_214525.1| putative septation inhibitor protein (Rv0011c) [Mycobacterium tuberculosis H37Rv] 93 JCSG0516 1-55 -9.680 16  TM0241 TM0241 282120 Purified-2004-10-27
12 gi|15607154|ref|NP_214526.1| hypothetical protein (Rv0012) [Mycobacterium tuberculosis H37Rv] 262 JCSG0516 17-261 -83.400 32  SP17421A ZP_02043984.1 406518 Purified-2010-01-22
13 gi|57116682|ref|YP_177615.1| para-aminobenzoate synthase component II (Rv0013) [Mycobacterium tuberculosis H37Rv] 232 JCSG0516 2-190 -75.700 50  TM0141 TM0141 282021 Purified-2004-02-02
2-232 -26.500 21  MA1820A NP_003866.1 400420 Selected-2008-12-22
14 gi|15607156|ref|NP_214528.1| transmembrane serine/threonine-protein kinase B PKNB (protein kinase B) (STPK B) (Rv0014c) [Mycobacterium tuberculosis H37Rv] 626 JCSG0516 1-626 -162.000 39  SF20747A NP_628036.1 423200 Purified-2011-09-23
15 gi|15607157|ref|NP_214529.1| transmembrane serine/threonine-protein kinase A PKNA (protein kinase A) (STPK A) (Rv0015c) [Mycobacterium tuberculosis H37Rv] 431 JCSG0516 4-431 -110.000 30  SF20747A NP_628036.1 423200 Purified-2011-09-23
16 gi|15607158|ref|NP_214530.1|(removed signalp:1-30) penicillin-binding protein PbpA (Rv0016c) [Mycobacterium tuberculosis H37Rv] 461 JCSG0516 2-461 -61.600 26  TM0590 TM0590 282463 Purified-2004-02-02
46-458 -69.200 24  SP17557B ZP_02041760.1 413493 Selected-2009-11-12
17 gi|15607159|ref|NP_214531.1|(removed signalp:1-35) cell division protein RodA (Rv0017c) [Mycobacterium tuberculosis H37Rv] 434 JCSG0516 43-412 -59.600 22  TM0233 TM0233 282112 Purified-2001-02-27
18 gi|15607160|ref|NP_214532.1| serine/threonine phosphatase (Rv0018c) [Mycobacterium tuberculosis H37Rv] 514 JCSG0516 7-242 -68.400 34  C.KS20801A NP_371743.1 423893 Crystal|NMR-2012-06-09
294-417 -10.600 12  SP17951A ZP_02041108.1 413555 Crystal|NMR-2011-11-06
19 gi|15607161|ref|NP_214533.1| hypothetical protein (Rv0019c) [Mycobacterium tuberculosis H37Rv] 155 JCSG0516 1-154 -78.300 35  SP1588A ZP_02043995.1 406531 Purified-2010-09-29
20 gi|15607162|ref|NP_214534.1| hypothetical protein (Rv0020c) [Mycobacterium tuberculosis H37Rv] 527 JCSG0516 66-521 -13.800 11  RG2003A.EWS BC004817 421797 Purified-2011-07-14
395-525 -33.700 20  SP1588A ZP_02043995.1 406531 Purified-2010-09-29


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;