current user: public

anford Burnham Prebys Medical Discovery Institute
We are hiring bioinformatics experts and software developers. Join us!

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 19629next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 CE21227 CE21227 1315 PDB-2004-06-11 525 PfamA30U 65-498 -137.000 54  PF07994.10; E3KGF0_PUCGT/99-558; Myo-inositol-1-phosphate synthase
2 TM0001 TM0001 281882 Purified-2001-08-24 41 PfamA30U 15-22 -6.060 75  PF15547.4; F6RD88_HORSE/33-169; Domain of unknown function (DUF4654 topsan)
3 TM0002 TM0002 281883 Purified-2001-08-29 41 PfamA30U 4-33 -4.320 16  PF17196.2; Q82NZ0_STRAW/1-65; Protein of unknown function (DUF5133 topsan)
4 TM0003 TM0003 281884 Purified-2001-12-06 40 PfamA30U 12-40 -4.840 PF00847.18; Q4N1F5_THEPA/211-264; AP2 domain
5 TM0004 TM0004 281885 Purified-2004-07-19 31 PfamA30U 7-31 -4.900 20  PF04403.11; B3EAR6_GEOLS/49-206; Paraquat-inducible protein A
6 TM0005 TM0005 281886 Purified-2001-01-30 650 PfamA30U 170-419 -70.700 29  PF13086.4; B6HQI4_PENRW/1305-1589; AAA domain
424-626 -69.000 34  PF13087.4; DNA2_RAT/805-1017; AAA domain
7 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 PfamA30U 6-123 -39.300 22  PF02746.14; CLCB_PSEPU/5-125; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
116-335 -45.500 14  PF07476.9; A8AJ73_CITK8/162-410; Methylaspartate ammonia-lyase C-terminus
8 TM0007 TM0007 281888 Purified-2004-07-19 438 PfamA30U 209-362 -13.000 14  PF14381.4; K4BU86_SOLLC/288-498; Ethylene-responsive protein kinase Le-CTR1
259-363 -47.800 18  PF01841.17; Q0W040_METAR/73-192; Transglutaminase-like superfamily
318-438 -14.600 PF14402.4; A0KIF3_AERHH/188-499; 7 transmembrane helices usually fused to an inactive transglutaminase
9 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 PfamA30U 3-157 -57.000 23  PF04199.11; B9JI03_AGRRK/6-186; Putative cyclase
10 TM0009 TM0009 281890 Purified-2001-02-14 142 PfamA30U 5-140 -33.100 15  PF09968.7; A6LNR3_THEM4/28-188; Uncharacterized protein domain (DUF2202 topsan)
11 TM0010 TM0010 281891 Purified-2005-03-03 607 PfamA30U 8-87 -11.500 20  PF07845.9; K9UG38_9CHRO/7-125; Protein of unknown function (DUF1636 topsan)
158-328 -18.400 28  PF01512.15; A1U014_MARHV/14-154; Respiratory-chain NADH dehydrogenase 51 Kd subunit
440-524 -41.200 36  PF10589.7; C6WX56_METML/343-427; NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
543-594 -17.200 34  PF14697.4; E4PIH9_MARAH/57-111; 4Fe-4S dicluster domain
12 TM0011 TM0011 281892 Purified-2004-02-02 128 PfamA30U 3-110 -16.200 22  PF01257.17; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin
35-120 -23.200 16  PF07845.9; K9UG38_9CHRO/7-125; Protein of unknown function (DUF1636 topsan)
13 TM0012 TM0012 281893 Purified-2001-08-29 176 PfamA30U 26-173 -71.100 34  PF01257.17; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin
14 TM0013 TM0013 281894 Purified-2001-08-24 253 PfamA30U 22-240 -24.600 13  PF14597.4; K9Q9I8_9NOSO/1-199; Metallo-beta-lactamase superfamily
15 TM0014 TM0014 281895 Purified-2001-01-30 278 PfamA30U 1-275 -26.700 PF06109.11; K7JEL9_NASVI/32-340; Haemolysin E (HlyE)
32-263 -45.200 11  PF03532.11; O50963_BORBU/3-255; OMS28 porin
16 TM0015 TM0015 281896 PDB-2007-09-14 192 PfamA30U 14-186 -52.900 21  PF01558.16; Q67PU1_SYMTH/11-175; Pyruvate ferredoxin/flavodoxin oxidoreductase
17 TM0016 TM0016 281897 Purified-2001-08-24 101 PfamA30U 36-90 -27.600 32  PF14697.4; E4PIH9_MARAH/57-111; 4Fe-4S dicluster domain
18 TM0017 TM0017 281898 Purified-2003-03-05 394 PfamA30U 20-193 -33.500 32  PF01855.17; KORA_ARCFU/14-229; Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
267-370 -21.100 23  PF17147.2; Q1IT45_KORVE/244-338; Pyruvate:ferredoxin oxidoreductase core domain II
19 TM0018 TM0018 281899 Purified-2001-08-24 324 PfamA30U 1-226 -9.380 16  PF13292.4; DXS_HELMI/5-280; 1-deoxy-D-xylulose-5-phosphate synthase
20 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 PfamA30U 5-195 -73.300 33  PF00106.23; YOXD_BACSU/7-201; short chain dehydrogenase
10-248 -33.200 22  PF13561.4; I0I4U0_CALAS/13-250; Enoyl-(Acyl carrier protein) reductase


FFAS is supported by the NIH grant R01-GM087218-01
1 2 0 2 1 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;