current user: public




Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 17837next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 CE21227 CE21227 1315 PDB-2004-06-11 525 PfamA26U 65-498 -118.000 56  PF07994.7; Q6CFS3_YARLI/75-512; Myo-inositol-1-phosphate synthase
2 TM0001 TM0001 281882 Purified-2001-08-24 41 PfamA26U 13-33 -4.810 38  PF07660.9; A6C2R4_9PLAN/303-351; Secretin and TonB N terminus short domain
3 TM0002 TM0002 281883 Purified-2001-08-29 41 PfamA26U 3-35 -5.790 PF03004.9; Q9M9D8_ARATH/153-297; Plant transposase (Ptta/En/Spm family)
4 TM0003 TM0003 281884 Purified-2001-12-06 40 PfamA26U 23-39 -4.180 35  PF01840.12; TCL1A_MOUSE/1-111; TCL1/MTCP1 family
5 TM0004 TM0004 281885 Purified-2004-07-19 31 PfamA26U 6-31 -4.540 15  PF02791.12; Q7RXP4_NEUCR/357-420; DDT domain
6 TM0005 TM0005 281886 Purified-2001-01-30 650 PfamA26U 170-419 -58.600 30  PF13086.1; B6HQI4_PENCW/1305-1589; AAA domain
424-626 -71.000 33  PF13087.1; D3ZG52_RAT/805-1017; AAA domain
7 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 PfamA26U 6-123 -42.500 22  PF02746.11; CLCB_PSEPU/5-125; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
141-311 -33.500 17  PF07476.6; O66145_CITAM/161-411; Methylaspartate ammonia-lyase C-terminus
241-345 -26.700 15  PF13378.1; DGOD_VEREI/234-351; Enolase C-terminal domain-like
8 TM0007 TM0007 281888 Purified-2004-07-19 438 PfamA26U 229-364 -31.500 11  PF14381.1; B9SY16_RICCO/70-280; Ethylene-responsive protein kinase Le-CTR1
259-363 -56.300 18  PF01841.14; Q0W040_UNCMA/73-192; Transglutaminase-like superfamily
316-418 -15.400 13  PF14402.1; A4SPP0_AERS4/186-501; 7 transmembrane helices usually fused to an inactive transglutaminase
9 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 PfamA26U 2-158 -69.300 20  PF04199.8; A8MEU2_ALKOO/9-169; Putative cyclase
10 TM0009 TM0009 281890 Purified-2001-02-14 142 PfamA26U 3-141 -44.800 13  PF13668.1; A3XPH6_LEEBM/59-205; Ferritin-like domain
11 TM0010 TM0010 281891 Purified-2005-03-03 607 PfamA26U 2-81 -10.300 21  PF01257.14; Q1HPR5_BOMMO/56-203; Respiratory-chain NADH dehydrogenase 24 Kd subunit
158-329 -40.700 27  PF01512.12; A1U014_MARAV/14-154; Respiratory-chain NADH dehydrogenase 51 Kd subunit
415-589 -10.300 14  PF00757.15; INSR_XENLA/189-350; Furin-like cysteine rich region
439-484 -23.100 65  PF10589.4; A7ALS7_9PORP/404-449; NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
547-593 -21.800 42  PF13187.1; Q8PZV2_METMA/251-319; 4Fe-4S dicluster domain
12 TM0011 TM0011 281892 Purified-2004-02-02 128 PfamA26U 3-110 -29.900 20  PF01257.14; Q1HPR5_BOMMO/56-203; Respiratory-chain NADH dehydrogenase 24 Kd subunit
13 TM0012 TM0012 281893 Purified-2001-08-29 176 PfamA26U 26-173 -82.700 34  PF01257.14; Q1HPR5_BOMMO/56-203; Respiratory-chain NADH dehydrogenase 24 Kd subunit
14 TM0013 TM0013 281894 Purified-2001-08-24 253 PfamA26U 28-238 -18.700 14  PF14234.1; B4VMX6_9CYAN/40-360; Domain of unknown function (DUF4336 topsan)
15 TM0014 TM0014 281895 Purified-2001-01-30 278 PfamA26U 1-263 -32.600 10  PF03532.8; O50963_BORBU/3-255; OMS28 porin
82-277 -39.900 22  PF00015.16; MCPC_SALTY/323-517; Methyl-accepting chemotaxis protein (MCP) signalling domain
16 TM0015 TM0015 281896 PDB-2007-09-14 192 PfamA26U 16-186 -59.200 20  PF01558.13; Q31EX2_THICR/20-185; Pyruvate ferredoxin/flavodoxin oxidoreductase
17 TM0016 TM0016 281897 Purified-2001-08-24 101 PfamA26U 42-88 -20.900 31  PF13187.1; Q8PZV2_METMA/251-319; 4Fe-4S dicluster domain
18 TM0017 TM0017 281898 Purified-2003-03-05 394 PfamA26U 20-197 -41.700 28  PF01855.14; KORA_ARCFU/14-229; Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
265-365 -12.700 17  PF02780.15; O16144_ASCSU/223-346; Transketolase, C-terminal domain
19 TM0018 TM0018 281899 Purified-2001-08-24 324 PfamA26U 55-224 -10.400 16  PF02775.16; Q6LZH8_METMP/393-541; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
20 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 PfamA26U 13-249 -57.200 13  PF13561.1; A1ZQI0_9BACT/15-256; Enoyl-(Acyl carrier protein) reductase


FFAS is supported by the NIH grant R01-GM087218-01
6 1 9 6 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Locations of visitors to this page

Selected papers from Godzik Lab

Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.