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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 182next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508; 217 SCOP206 48-217 -32.900 12  d3ckca_ a.118.8.6 (A:) Starch utilization system protein SusD {Bacteroides thetaiotaomicron [TaxId: 818]}
2 HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920; 360 SCOP206 47-187 -39.400 26  d2x42a3 b.1.31.1 (A:600-721) Beta-glucosidase C-terminal domain {Thermotoga neapolitana [TaxId: 309803]}
3 HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000; 81 SCOP206 4-50 -7.930 25  d2eyqa1 b.34.18.1 (A:466-545) Transcription-repair coupling factor, RRCF, middle domain {Escherichia coli [TaxId: 562]}
4 HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074; 227 SCOP206 6-150 -7.080 10  d2pyba_ a.25.1.1 (A:) Dodecameric ferritin homolog {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}
5 HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833; 173 SCOP206 5-173 -16.800 17  d3dnua_ d.144.1.7 (A:) Multidrug tolerance (MDT) protein HipA N-terminal domain {Escherichia coli K-12 [TaxId: 83333]}
6 HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473; 223 SCOP206 140-222 -7.580 12  d1dgna_ a.77.1.3 (A:) Iceberg {Human (Homo sapiens) [TaxId: 9606]}
7 HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024; 121 SCOP206 16-59 -6.260 d1q2ha_ a.34.4.1 (A:) Adapter protein APS, dimerisation domain {Human (Homo sapiens) [TaxId: 9606]}
8 HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066; 164 SCOP206 12-129 -6.820 12  d3f5oa_ d.38.1.5 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
9 HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178; 122 SCOP206 7-76 -5.690 11  d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
10 HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304; 200 SCOP206 19-154 -7.000 14  d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
11 HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397; 274 SCOP206 103-241 -7.160 12  d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga maritima [TaxId: 2336]}
12 HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411; 255 SCOP206 2-70 -7.150 13  d3f8ba_ a.4.5.0 (A:) automated matches {Lactococcus lactis [TaxId: 416870]}
13 HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523; 127 SCOP206 16-92 -7.630 10  d1u5tb1 a.4.5.54 (B:396-489) Vacuolar protein sorting-associated protein VPS36 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
14 HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561; 136 SCOP206 27-84 -5.510 13  d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II, PAC) {Streptococcus mutans [TaxId: 1309]}
15 HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574; 92 SCOP206 9-88 -7.660 d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Norway rat (Rattus norvegicus) [TaxId: 10116]}
16 HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580; 203 SCOP206 12-68 -9.090 17  d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
17 HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636; 115 SCOP206 32-95 -6.540 10  d3cuqa2 a.4.5.0 (A:176-252) automated matches {Human (Homo sapiens) [TaxId: 9606]}
18 HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669; 125 SCOP206 54-118 -11.600 20  d1j9ia_ a.6.1.5 (A:) Terminase gpNU1 subunit domain {Bacteriophage lambda [TaxId: 10710]}
19 HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679; 172 SCOP206 1-167 -9.520 d2pora_ f.4.3.1 (A:) Porin {Rhodobacter capsulatus [TaxId: 1061]}
20 HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709; 112 SCOP206 1-59 -5.730 11  d1xvxa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Yersinia enterocolitica, YfuA [TaxId: 630]}


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.