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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 182next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508; 217 COG0516 105-217 -7.180 18  [K] KOG1657 CCAAT-binding factor, subunit C (HAP5)
2 HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920; 360 COG0516 61-148 -9.850 [U] KOG3317 Translocon-associated complex TRAP, beta subunit
3 HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000; 81 COG0516 1-65 -6.180 16  [S] COG3007 Uncharacterized paraquat-inducible protein B
4 HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074; 227 COG0516 12-172 -7.550 12  [J] KOG3933 Mitochondrial ribosomal protein S28
5 HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833; 173 COG0516 4-173 -17.000 17  [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes
6 HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473; 223 COG0516 1-220 -22.400 14  [K] COG5340 Predicted transcriptional regulator
7 HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024; 121 COG0516 2-121 -20.300 13  [R] COG5545 Predicted P-loop ATPase and inactivated derivatives
8 HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066; 164 COG0516 4-39 -7.020 [S] COG3763 Uncharacterized protein conserved in bacteria
9 HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178; 122 COG0516 1-81 -8.120 13  [E] COG1605 Chorismate mutase
10 HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304; 200 COG0516 4-200 -93.100 41  [R] COG3943 Virulence protein
11 HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397; 274 COG0516 132-232 -7.320 [S] COG4461 Uncharacterized protein conserved in bacteria, putative lipoprotein
12 HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411; 255 COG0516 1-137 -6.230 14  [U] KOG0070 GTP-binding ADP-ribosylation factor Arf1
13 HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523; 127 COG0516 1-127 -7.700 17  [R] COG4734 Antirestriction protein
14 HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561; 136 COG0516 1-100 -7.420 14  [U] COG2443 Preprotein translocase subunit Sss1
15 HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574; 92 COG0516 1-91 -30.800 23  [S] COG1598 Uncharacterized conserved protein
16 HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580; 203 COG0516 6-201 -11.300 12  [L] KOG1906 DNA polymerase sigma
17 HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636; 115 COG0516 12-112 -8.740 17  [S] KOG4610 Uncharacterized conserved protein
18 HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669; 125 COG0516 54-118 -9.500 23  [L] COG4220 Phage DNA packaging protein, Nu1 subunit of terminase
19 HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679; 172 COG0516 1-145 -10.300 [M] COG4571 Outer membrane protease
20 HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709; 112 COG0516 3-57 -8.020 17  [K] COG5149 Transcription initiation factor IIA, large chain


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.