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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 55674next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 sp|Q29940|1B59_HUMAN(removed signalp:1-24) HLA class I histocompatibility antigen, B-59 alpha chain OS=Homo sapiens GN=HLA-B PE=2 SV=1 338 PDB0516 1-338 -133.000 66  1s7u_A mol:protein length:338 H-2 class I histocompatibility antigen, D-B a
2 sp|P08908|5HT1A_HUMAN 5-hydroxytryptamine receptor 1A OS=Homo sapiens GN=HTR1A PE=1 SV=3 422 PDB0516 17-421 -118.000 35  4iaq_A mol:protein length:403 Chimera protein of human 5-hydroxytryptamine
3 sp|Q15758|AAAT_HUMAN Neutral amino acid transporter B(0) OS=Homo sapiens GN=SLC1A5 PE=1 SV=2 541 PDB0516 43-497 -86.300 28  4ky0_A mol:protein length:431 Proton/glutamate symporter, SDF family
4 sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E member 1 OS=Homo sapiens GN=ABCE1 PE=1 SV=1 599 PDB0516 1-599 -151.000 68  3j16_B mol:protein length:608 Rli1p
5 sp|P07108|ACBP_HUMAN Acyl-CoA-binding protein OS=Homo sapiens GN=DBI PE=1 SV=2 87 PDB0516 1-87 -68.400 100  2cb8_A mol:protein length:87 ACYL-COA-BINDING PROTEIN
6 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 1-300) 300 PDB0516 17-299 -87.300 34  1w07_A mol:protein length:659 ACYL-COA OXIDASE
7 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 151-450) 300 PDB0516 1-300 -107.000 43  1w07_A mol:protein length:659 ACYL-COA OXIDASE
8 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 301-600) 300 PDB0516 1-300 -78.000 30  1w07_A mol:protein length:659 ACYL-COA OXIDASE
9 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 451-700) 250 PDB0516 1-250 -58.900 23  1w07_A mol:protein length:659 ACYL-COA OXIDASE
10 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 1-300) 300 PDB0516 31-300 -41.000 3p24_A mol:protein length:397 BFT-3
179-300 -61.900 49  1r54_A mol:protein length:214 ADAM 33
11 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 151-450) 300 PDB0516 20-300 -104.000 39  2ero_A mol:protein length:427 vascular apoptosis-inducing protein 1
12 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 301-600) 300 PDB0516 1-259 -82.800 40  2e3x_A mol:protein length:427 Coagulation factor X-activating enzyme heavy
1-300 -81.900 37  2ero_A mol:protein length:427 vascular apoptosis-inducing protein 1
13 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 451-750) 300 PDB0516 1-227 -67.100 33  3g5c_A mol:protein length:510 ADAM 22
14 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 601-900) 300 PDB0516 1-79 -29.300 30  3g5c_A mol:protein length:510 ADAM 22
15 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 751-930) 180 PDB0516 4-179 -13.300 3jcm_A mol:protein length:2413 Pre-mRNA-splicing factor 8
55-180 -17.200 12  5fz2_A mol:protein length:904 ENVELOPE GLYCOPROTEIN B
16 sp|P11766|ADHX_HUMAN Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4 374 PDB0516 1-374 -131.000 100  1mc5_A mol:protein length:374 Alcohol dehydrogenase class III chi chain
17 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 1-300) 300 PDB0516 1-146 -15.300 11  5fz2_A mol:protein length:904 ENVELOPE GLYCOPROTEIN B
62-219 -12.400 10  5i4d_A mol:protein length:343 Superantigen-like protein
63-300 -11.100 10  5fur_J mol:protein length:677 TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT
18 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 151-450) 300 PDB0516 243-300 -22.300 44  3ihw_A mol:protein length:184 CENTG3
19 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 301-600) 300 PDB0516 101-277 -79.300 99  2bmj_A mol:protein length:178 CENTAURIN GAMMA 1
20 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 451-750) 300 PDB0516 1-127 -64.700 100  2bmj_A mol:protein length:178 CENTAURIN GAMMA 1


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]