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anford Burnham Prebys Medical Discovery Institute
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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1653next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695] 138 VFDB 1-138 -5.710 11  VFG001005(gi:31983568) (mxiC) type III secretion system gatekeeper MxiD [TTSS (VF0118)] [Shigella flexneri 2a str. 301]
2 gi|15644636|ref|NP_206804.1| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695] 156 VFDB 8-149 -5.210 14  VFG002197(gi:29375537) (bopD) sugar-binding transcriptional regulator, LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
3 gi|15644637|ref|NP_206805.1| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695] 276 VFDB 2-276 -118.000 46  VFG011414(gi:17987133) (kdsA) 2-dehydro-3-deoxyphosphooctonate aldolase [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M]
4 gi|15644638|ref|NP_206806.1| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695] 221 VFDB 56-184 -5.480 11  VFG002236(gi:49476015) (virB7) 15-kDa antigen protein VirB7 [VirB/VirD4 type IV secretion system (VF0369)] [Bartonella henselae str. Houston-1]
5 gi|15644639|ref|NP_206807.1| orotidine 5'-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695] 227 VFDB 1-210 -5.750 12  VFG043390(gi:15646189) (pdxJ) pyridoxine 5`-phosphate synthase [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]
6 gi|15644640|ref|NP_206808.1| pantoate--beta-alanine ligase (HP0006) [Helicobacter pylori 26695] 276 VFDB 19-164 -6.880 15  VFG000320(gi:15646084) (kdtB) lipopolysaccharide core biosynthesis protein [LPS (VF0056)] [Helicobacter pylori 26695]
7 gi|15646197|ref|NP_206811.1| outer membrane protein (HP0009) [Helicobacter pylori 26695] 634 VFDB 1-634 -114.000 100  VFG001142(gi:15646197) (hopZ) outer membrane protein adhesin [HopZ (VF0054)] [Helicobacter pylori 26695]
8 gi|15644643|ref|NP_206812.1| chaperonin GroEL (HP0010) [Helicobacter pylori 26695] 546 VFDB 1-546 -158.000 62  VFG001855(gi:52840925) (htpB) Hsp60, 60K heat shock protein HtpB [Hsp60 (VF0159)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
9 gi|15644644|ref|NP_206813.1| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695] 118 VFDB 6-110 -6.760 12  VFG036974(gi:15677563) (mtrC) membrane fusion protein MtrC [MtrCDE (VF0451)] [Neisseria meningitidis MC58]
10 gi|15644645|ref|NP_206814.1| DNA primase (HP0012) [Helicobacter pylori 26695] 559 VFDB 95-351 -5.830 14  VFG045552(gi:52842203) (lpg1986) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
11 gi|15644646|ref|NP_206815.1| hypothetical protein (HP0013) [Helicobacter pylori 26695] 350 VFDB 2-320 -13.000 10  VFG012019(gi:15792639) (pseA) pseudaminic acid biosynthesis PseA protein [Pse5Ac7Ac, Pse5Ac7Am, Pse8OAc, Pse5Am7AcGlnAc (AI151)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
12 gi|15644647|ref|NP_206816.1| hypothetical protein (HP0014) [Helicobacter pylori 26695] 275 VFDB 3-236 -4.200 10  VFG016005(gi:15597591) (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
13 gi|15644648|ref|NP_206817.1| hypothetical protein (HP0015) [Helicobacter pylori 26695] 93 VFDB 21-91 -14.100 11  VFG002231(gi:49476010) (virB2) type IV secretion system major pilin subunit VirB2 protein homolog [VirB/VirD4 type IV secretion system (VF0369)] [Bartonella henselae str. Houston-1]
14 gi|15644649|ref|NP_206818.1| hypothetical protein (HP0016) [Helicobacter pylori 26695] 87 VFDB 7-82 -18.000 13  VFG002232(gi:49476011) (virB3) type IV secretion system virB3 protein homolog [VirB/VirD4 type IV secretion system (VF0369)] [Bartonella henselae str. Houston-1]
15 gi|15644650|ref|NP_206819.1| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695] 787 VFDB 1-787 -143.000 29  VFG001981(gi:32469876) (virB4) Type IV secretion system protein VirB4 [Type IV secretion system (VF0325)] [Campylobacter jejuni subsp. jejuni 81-176]
16 gi|15644651|ref|NP_206820.1| hypothetical protein (HP0018) [Helicobacter pylori 26695] 469 VFDB 1-255 -28.600 11  VFG042869(gi:52841776) (pilF) type IV pilus biogenesis protein PilF [type IV pili (AI111)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
20-357 -12.400 VFG000423(gi:16763113) (vexE) Vi polysaccharide export protein VexE [Vi antigen (VF0101)] [Salmonella enterica subsp. enterica serovar Typhi str. CT18]
17 gi|15644652|ref|NP_206821.1| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695] 321 VFDB 1-321 -120.000 100  VFG043364(gi:15644652) (cheV1) chemotaxis coupling protein CheV1 [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]
18 gi|15644653|ref|NP_206822.1| carboxynorspermidine decarboxylase (nspC) (HP0020) [Helicobacter pylori 26695] 405 VFDB 237-378 -4.930 17  VFG011399(gi:17987115) (fabZ) (3R)-hydroxymyristoyl ACP dehydratase [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M]
19 gi|15644654|ref|NP_206823.1| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695] 190 VFDB 45-189 -45.100 14  VFG011439(gi:17987495) (lpxE) phosphatidylglycerophosphatase B [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M]
20 gi|15644655|ref|NP_206824.1| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695] 521 VFDB 12-521 -116.000 31  VFG043392(gi:218561919) (eptC) phosphoethanolamine transferase [Pse5Ac7Ac, Pse5Ac7Am, Pse8OAc, Pse5Am7AcGlnAc (AI151)] [Campylobacter jejuni subsp. jejuni NCTC 11168]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.