current user: public

anford Burnham Prebys Medical Discovery Institute
Please be advised that due to the planned maintenance our websites might be temporarily unavailable on December 17-18, 2018. We apologise for the inconvenience that this may cause.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4125next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16127995|ref|NP_414542.1| thr operon leader peptide (thrL b0001 exp) [Escherichia coli str. K-12 substr. MG1655] 21 PfamA30U 1-11 -2.750 36  PF10471.7; C1HA50_PARBA/1-73; Anaphase-promoting complex APC subunit CDC26
2 gi|16127996|ref|NP_414543.1| fused aspartokinase I and homoserine dehydrogenase I (thrA b0002 exp) [Escherichia coli str. K-12 substr. MG1655] 820 PfamA30U 614-811 -29.800 28  PF00742.17; R5EAW4_9BURK/138-316; Homoserine dehydrogenase
3 gi|16127997|ref|NP_414544.1| homoserine kinase (thrB b0003 exp) [Escherichia coli str. K-12 substr. MG1655] 310 PfamA30U 83-150 -13.200 25  PF00288.24; ISPE_BACSU/86-144; GHMP kinases N terminal domain
4 gi|16127998|ref|NP_414545.1| threonine synthase (thrC b0004 exp) [Escherichia coli str. K-12 substr. MG1655] 428 PfamA30U 2-80 -36.400 32  PF14821.4; Q21LF7_SACD2/2-80; Threonine synthase N terminus
5 gi|16127999|ref|NP_414546.1|(removed signal:1-23) predicted protein (yaaX b0005 exp) [Escherichia coli str. K-12 substr. MG1655] 75 PfamA30U 2-75 -34.300 31  PF10697.7; Q0WCT3_YERPE/39-126; Protein of unknown function (DUF2502 topsan)
6 gi|16128000|ref|NP_414547.1| conserved protein, UPF0246 family (yaaA b0006 exp) [Escherichia coli str. K-12 substr. MG1655] 258 PfamA30U 1-243 -124.000 60  PF03883.12; D4ZH13_SHEVD/1-244; Peroxide stress protein YaaA
7 gi|16128001|ref|NP_414548.1| predicted transporter (yaaJ b0007 exp) [Escherichia coli str. K-12 substr. MG1655] 476 PfamA30U 47-453 -118.000 46  PF01235.15; C5DAE3_GEOSW/49-446; Sodium:alanine symporter family
8 gi|16128002|ref|NP_414549.1| transaldolase B (talB b0008 exp) [Escherichia coli str. K-12 substr. MG1655] 317 PfamA30U 14-313 -146.000 58  PF00923.17; Q966C7_CAEEL/13-315; Transaldolase/Fructose-6-phosphate aldolase
9 gi|16128003|ref|NP_414550.1| molybdochelatase incorporating molybdenum into molybdopterin (mog b0009 exp) [Escherichia coli str. K-12 substr. MG1655] 195 PfamA30U 8-144 -17.400 21  PF00994.22; CINAL_DESPS/4-169; Probable molybdopterin binding domain
10 gi|16128004|ref|NP_414551.1| inner membrane protein, Grp1_Fun34_YaaH family (yaaH b0010 exp) [Escherichia coli str. K-12 substr. MG1655] 188 PfamA30U 3-187 -89.100 33  PF01184.17; A7TND9_VANPO/71-277; GPR1/FUN34/yaaH family
11 gi|16128005|ref|NP_414552.1| conserved protein, UPF0174 family (yaaW b0011 exp) [Escherichia coli str. K-12 substr. MG1655] 237 PfamA30U 5-38 -10.600 29  PF13099.4; E3D0J1_9BACT/3-37; Domain of unknown function (DUF3944 topsan)
12 gi|16128007|ref|NP_414554.1|(removed signal:1-23) conserved protein, UPF0412 family (yaaI b0013 exp) [Escherichia coli str. K-12 substr. MG1655] 111 PfamA30U 1-109 -55.500 79  PF10807.6; A6T4F3_KLEP7/3-132; Protein of unknown function (DUF2541 topsan)
13 gi|16128008|ref|NP_414555.1| chaperone Hsp70, co-chaperone with DnaJ (dnaK b0014 exp) [Escherichia coli str. K-12 substr. MG1655] 638 PfamA30U 4-604 -202.000 62  PF00012.18; HSP7E_DROME/54-653; Hsp70 protein
14 gi|16128009|ref|NP_414556.1| chaperone Hsp40, co-chaperone with DnaK (dnaJ b0015 exp) [Escherichia coli str. K-12 substr. MG1655] 376 PfamA30U 5-67 -38.900 54  PF00226.29; Q22028_CAEEL/17-79; DnaJ domain
117-330 -84.600 34  PF01556.16; T0NBZ6_9EURY/129-343; DnaJ C terminal domain
15 gi|16128010|ref|NP_414557.1| IS186 transposase (insL b0016 exp) [Escherichia coli str. K-12 substr. MG1655] 370 PfamA30U 4-354 -30.900 12  PF04693.10; Q5MPE9_9CREN/3-342; Archaeal putative transposase ISC1217
16 gi|16128012|ref|NP_414559.1| regulatory protein for HokC, overlaps CDS of hokC (mokC b0018 exp) [Escherichia coli str. K-12 substr. MG1655] 69 PfamA30U 26-66 -30.400 43  PF01848.14; A8GAB3_SERP5/6-46; Hok/gef family
17 gi|49175991|ref|YP_025292.1| toxic membrane protein, small (hokC b4412 exp) [Escherichia coli str. K-12 substr. MG1655] 50 PfamA30U 7-47 -30.800 43  PF01848.14; A8GAB3_SERP5/6-46; Hok/gef family
18 gi|16128013|ref|NP_414560.1| sodium-proton antiporter (nhaA b0019 exp) [Escherichia coli str. K-12 substr. MG1655] 388 PfamA30U 5-380 -121.000 100  PF06965.10; NHAA_ECOLI/5-380; Na+/H+ antiporter 1
19 gi|16128014|ref|NP_414561.1| DNA-binding transcriptional activator (nhaR b0020 exp) [Escherichia coli str. K-12 substr. MG1655] 301 PfamA30U 13-66 -20.900 29  PF00126.25; Q8EIK0_SHEON/8-63; Bacterial regulatory helix-turn-helix protein, lysR family
90-295 -19.900 11  PF03466.18; Q98I60_RHILO/88-294; LysR substrate binding domain
20 gi|16128015|ref|NP_414562.1| IS1 transposase B (insB b0021 exp) [Escherichia coli str. K-12 substr. MG1655] 167 PfamA30U 37-167 -86.700 99  PF03400.11; Q32H87_SHIDS/20-150; IS1 transposase


FFAS is supported by the NIH grant R01-GM087218-01
1 2 0 2 5 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]