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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4125next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16127995|ref|NP_414542.1| thr operon leader peptide (thrL b0001 exp) [Escherichia coli str. K-12 substr. MG1655] 21 JCSG0516 1-19 -6.530 21  SP18373A NP_372525.1 413697 Purified-2010-09-29
2 gi|16127996|ref|NP_414543.1| fused aspartokinase I and homoserine dehydrogenase I (thrA b0002 exp) [Escherichia coli str. K-12 substr. MG1655] 820 JCSG0516 1-477 -89.700 20  MJ8463A YP_957443.1 403171 Crystal|NMR-2009-10-31
465-815 -44.900 23  FN12420A NP_978932.1 379029 Purified-2007-08-28
3 gi|16127997|ref|NP_414544.1| homoserine kinase (thrB b0003 exp) [Escherichia coli str. K-12 substr. MG1655] 310 JCSG0516 2-309 -92.200 26  TM0545 TM0545 282418 Purified-2001-12-06
4 gi|16127998|ref|NP_414545.1| threonine synthase (thrC b0004 exp) [Escherichia coli str. K-12 substr. MG1655] 428 JCSG0516 63-405 -21.900 23  TM0546 TM0546 282419 Purified-2001-10-17
5 gi|16127999|ref|NP_414546.1|(removed signal:1-23) predicted protein (yaaX b0005 exp) [Escherichia coli str. K-12 substr. MG1655] 75 JCSG0516 1-75 -42.800 97  SP18461C NP_285697.1 410853 Selected-2009-11-12
6 gi|16128000|ref|NP_414547.1| conserved protein, UPF0246 family (yaaA b0006 exp) [Escherichia coli str. K-12 substr. MG1655] 258 JCSG0516 23-218 -6.380 14  PS05988 NP_519234.1 376593 Purified-2007-11-08
7 gi|16128001|ref|NP_414548.1| predicted transporter (yaaJ b0007 exp) [Escherichia coli str. K-12 substr. MG1655] 476 JCSG0516 16-428 -6.090 13  SP19117A NP_251051.1 413324 Selected-2009-11-12
8 gi|16128002|ref|NP_414549.1| transaldolase B (talB b0008 exp) [Escherichia coli str. K-12 substr. MG1655] 317 JCSG0516 1-317 -145.000 59  MA0295A 13435797 399843 Cloned-2009-01-23
9 gi|16128003|ref|NP_414550.1| molybdochelatase incorporating molybdenum into molybdopterin (mog b0009 exp) [Escherichia coli str. K-12 substr. MG1655] 195 JCSG0516 1-142 -13.600 22  GE7651A YP_001088583.1 396890 Crystal|NMR-2009-07-18
10 gi|16128004|ref|NP_414551.1| inner membrane protein, Grp1_Fun34_YaaH family (yaaH b0010 exp) [Escherichia coli str. K-12 substr. MG1655] 188 JCSG0516 8-130 -7.240 15  TM1341 TM1341 283203 Purified-2001-12-19
11 gi|16128005|ref|NP_414552.1| conserved protein, UPF0174 family (yaaW b0011 exp) [Escherichia coli str. K-12 substr. MG1655] 237 JCSG0516 3-142 -7.960 14  MG8793B YP_413069.1 391079 Purified-2008-09-03
12 gi|16128007|ref|NP_414554.1|(removed signal:1-23) conserved protein, UPF0412 family (yaaI b0013 exp) [Escherichia coli str. K-12 substr. MG1655] 111 JCSG0516 1-111 -56.900 80  GS13914A YP_001333704.1 384834 Purified-2010-04-01
13 gi|16128008|ref|NP_414555.1| chaperone Hsp70, co-chaperone with DnaJ (dnaK b0014 exp) [Escherichia coli str. K-12 substr. MG1655] 638 JCSG0516 1-614 -190.000 53  TM0373 TM0373 282248 Purified-2001-03-14
14 gi|16128009|ref|NP_414556.1| chaperone Hsp40, co-chaperone with DnaK (dnaJ b0015 exp) [Escherichia coli str. K-12 substr. MG1655] 376 JCSG0516 1-353 -130.000 40  TM0849 TM0849 282719 Selected-2001-10-12
15 gi|16128010|ref|NP_414557.1| IS186 transposase (insL b0016 exp) [Escherichia coli str. K-12 substr. MG1655] 370 JCSG0516 10-352 -10.800 14  TT7869C NP_718826.1 404150 Selected-2009-08-14
16 gi|16128012|ref|NP_414559.1| regulatory protein for HokC, overlaps CDS of hokC (mokC b0018 exp) [Escherichia coli str. K-12 substr. MG1655] 69 JCSG0516 17-47 -10.800 19  SP16841A ZP_02037722.1 407172 Purified-2010-09-29
17 gi|49175991|ref|YP_025292.1| toxic membrane protein, small (hokC b4412 exp) [Escherichia coli str. K-12 substr. MG1655] 50 JCSG0516 1-28 -9.090 17  SP16841A ZP_02037722.1 407172 Purified-2010-09-29
18 gi|16128013|ref|NP_414560.1| sodium-proton antiporter (nhaA b0019 exp) [Escherichia coli str. K-12 substr. MG1655] 388 JCSG0516 57-385 -4.890 15  MA16097A NP_775897.2 400084 Purified-2009-03-27
19 gi|16128014|ref|NP_414561.1| DNA-binding transcriptional activator (nhaR b0020 exp) [Escherichia coli str. K-12 substr. MG1655] 301 JCSG0516 3-300 -98.400 26  MJ10038I NP_902892.1 402605 Purified-2009-11-14
20 gi|16128015|ref|NP_414562.1| IS1 transposase B (insB b0021 exp) [Escherichia coli str. K-12 substr. MG1655] 167 JCSG0516 43-167 -13.700 13  GD14004A RER070207002105 388710 Selected-2007-09-21


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]