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# Query Length Result vs. Range Score %id Covered by template(s)
1 IDP00001 aldehyde-alcohol dehydrogenase BA_4599 [Bacillus anthracis str. Ames] 867 COG0516 14-469 -29.900 14  [C] KOG2454 Betaine aldehyde dehydrogenase
456-867 -128.000 51  [C] COG1454 Alcohol dehydrogenase, class IV
H.sapiens 2-451 -24.800 15  sp|P49189|AL9A1_HUMAN 4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3
452-864 -64.800 23  sp|Q8IWW8|HOT_HUMAN(removed signalp:1-21) Hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Homo sapiens GN=ADHFE1 PE=1 SV=1
HGM_OVER 243-393 -3.580 14  PB014033 A5ZI39_9BACE/1-158 PB014033; Pfam-B_14033;
JCSG0516 6-498 -133.000 41  MH9915K NP_815337.1 394181 Purified-2009-02-26
458-864 -70.300 26  TM0920 TM0920 282789 PDB-2002-07-03
NEW_HUMAN_DOMAINS 145-230 -4.760 19  tr|E7ER46|E7ER46_HUMAN Uncharacterized protein OS=Homo sapiens GN=FAM48A PE=4 SV=1 (Range: 571-658)
PDB0516 12-458 -133.000 46  3my7_A mol:protein length:452 Alcohol dehydrogenase/acetaldehyde dehydrogen
440-866 -134.000 73  3zdr_A mol:protein length:433 ALCOHOL DEHYDROGENASE DOMAIN OF THE BIFUNCTIO
PfamA30U 2-451 -25.700 15  PF00171.20; BETB_ECOLI/15-479; Aldehyde dehydrogenase family
464-856 -69.800 29  PF00465.17; Q2SC87_HAHCH/11-388; Iron-containing alcohol dehydrogenase
SCOP206 14-450 -26.700 16  d4dnga_ c.82.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}
461-864 -70.100 26  d1o2da1 e.22.1.2 (A:2-359) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]}
VFDB 1-866 -276.000 73  VFG006717(gi:16803674) (lap) Listeria adhesion protein Lap [Lap (VF0444)] [Listeria monocytogenes EGD-e]
2 IDP00002 surface layer protein, (pxo1-54) GBAA_pXO1_0079 [Bacillus anthracis str. 'Ames Ancestor'] 404 COG0516 43-225 -5.980 10  [T] KOG0044 Ca2+ sensor (EF-Hand superfamily)
H.sapiens 100-208 -6.200 21  sp|Q68CZ2|TENS3_HUMAN Tensin-3 OS=Homo sapiens GN=TNS3 PE=1 SV=2 (Range: 901-1200)
HGM_OVER 38-222 -3.380 12  PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;
JCSG0516 1-403 -29.900 12  SP8499C ZP_02035480.1 407150 Purified-2010-09-20
17-226 -50.400 21  SP16810A ZP_02037258.1 407135 Selected-2009-11-12
17-333 -30.400 16  SP16761G ZP_02035342.1 407147 Selected-2009-11-12
NEW_HUMAN_DOMAINS 20-228 -4.760 10  sp|Q5VYS4|CM033_HUMAN Uncharacterized protein C13orf33 OS=Homo sapiens GN=C13orf33 PE=2 SV=1 (Range: 70-303)
PDB0516 45-226 -57.900 30  3pyw_A mol:protein length:203 S-layer protein sap
46-275 -49.300 25  4aq1_A mol:protein length:892 SBSB PROTEIN
PfamA30U 47-90 -17.700 25  PF00395.18; U5LGG8_9BACI/157-200; S-layer homology domain
SCOP206 80-222 -5.370 11  d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Norway rat (Rattus norvegicus) [TaxId: 10116]}
VFDB 47-189 -5.490 10  VFG000503(gi:16764752) (sseE) type III secretion system effector SseE [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
3 IDP00003 gene: gerXC; spore germination protein xc, (pxo1-112) GBAA_pXO1_0158 [Bacillus anthracis str. 'Ames Ancestor'] 317 COG0516 1-31 -8.140 19  [M] COG4238 Murein lipoprotein
H.sapiens 176-279 -6.530 sp|P01814|HV201_HUMAN Ig heavy chain V-II region OU OS=Homo sapiens PE=1 SV=1
HGM_OVER 1-128 -8.410 10  HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;
JCSG0516 1-315 -12.000 10  SP16578A YP_211609.1 407980 Selected-2009-11-12
NEW_HUMAN_DOMAINS 47-107 -4.960 13  tr|B4E029|B4E029_HUMAN Uncharacterized protein OS=Homo sapiens GN=POU2F1 PE=2 SV=1 (Range: 563-646)
PDB0516 26-317 -62.000 17  3n54_B mol:protein length:350 Spore germination protein B3
PfamA30U 1-110 -9.900 PF16408.3; R6U353_9BACE/1-123; Domain of unknown function (DUF5016 topsan)
218-317 -30.600 12  PF05504.9; X4ZC10_9BACL/228-392; Spore germination B3/ GerAC like, C-terminal
SCOP206 23-112 -6.400 11  d3ejva1 d.17.4.28 (A:2-160) Uncharacterized protein Saro2766 {Novosphingobium aromaticivorans [TaxId: 48935]}
VFDB 1-143 -8.360 11  VFG001847(gi:52842880) (dotD) Dot/Icm type IV secretion system outer membrane subcomplex protein DotD [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
4 IDP00004 Chromosomal replication initiator protein dnaA BA_0001 [Bacillus anthracis str. Ames] 446 COG0516 3-446 -132.000 41  [L] COG0593 ATPase involved in DNA replication initiation
H.sapiens 5-355 -10.200 14  sp|Q9UN37|VPS4A_HUMAN Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1
54-324 -11.100 16  sp|P46459|NSF_HUMAN Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 SV=3 (Range: 151-450)
121-440 -10.600 16  sp|O43929|ORC4_HUMAN Origin recognition complex subunit 4 OS=Homo sapiens GN=ORC4L PE=1 SV=2
147-285 -12.500 21  sp|O43933|PEX1_HUMAN Peroxisome biogenesis factor 1 OS=Homo sapiens GN=PEX1 PE=1 SV=1 (Range: 451-750)
147-354 -12.000 16  sp|O15381|NVL_HUMAN Nuclear valosin-containing protein-like OS=Homo sapiens GN=NVL PE=1 SV=1 (Range: 601-856)
147-399 -11.700 14  sp|Q6PL18|ATAD2_HUMAN ATPase family AAA domain-containing protein 2 OS=Homo sapiens GN=ATAD2 PE=1 SV=1 (Range: 451-750)
HGM_OVER 180-333 -3.540 11  HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;
JCSG0516 1-446 -127.000 32  C.LS21333A NP_418828.1 430427 Purified-2014-07-08
NEW_HUMAN_DOMAINS 126-263 -5.760 13  sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)
PDB0516 7-446 -132.000 37  2z4r_A mol:protein length:440 Chromosomal replication initiator protein dna
PfamA30U 5-68 -16.400 20  PF11638.6; DNAA_LAWIP/5-67; DnaA N-terminal domain
111-329 -109.000 72  PF00308.16; DNAA_STRCO/317-535; Bacterial dnaA protein
356-424 -37.600 68  PF08299.9; D9QS97_ACEAZ/358-426; Bacterial dnaA protein helix-turn-helix
SCOP206 109-324 -101.000 42  d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
341-446 -46.100 30  d1l8qa1 a.4.12.2 (A:290-399) Chromosomal replication initiation factor DnaA C-terminal domain IV {Aquifex aeolicus [TaxId: 63363]}
VFDB 147-382 -6.880 14  VFG002380(gi:15611004) (eccA1) ESX-1 type VII secretion system AAA+ ATPase EccA1 [ESX-1 (VF0315)] [Mycobacterium tuberculosis H37Rv]
5 IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames] 1070 COG0516 5-778 -61.800 15  [S] COG4886 Leucine-rich repeat (LRR) protein
139-784 -74.100 12  [T] KOG0531 Protein phosphatase 1, regulatory subunit, and related proteins
228-865 -60.300 17  [T] KOG4194 Membrane glycoprotein LIG-1
896-1034 -11.000 [Z] KOG3756 Pinin (desmosome-associated protein)
958-1070 -10.300 10  [S] KOG4517 Uncharacterized conserved protein
H.sapiens 4-699 -57.500 18  sp|Q9UQ13|SHOC2_HUMAN Leucine-rich repeat protein SHOC-2 OS=Homo sapiens GN=SHOC2 PE=1 SV=2
201-789 -71.700 16  sp|Q7Z5L7|PODN_HUMAN(removed signalp:1-19) Podocan OS=Homo sapiens GN=PODN PE=1 SV=2
315-846 -45.000 15  sp|P22792|CPN2_HUMAN(removed signalp:1-21) Carboxypeptidase N subunit 2 OS=Homo sapiens GN=CPN2 PE=1 SV=2
532-1067 -43.200 14  sp|Q8N1G4|LRC47_HUMAN Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1
HGM_OVER 957-1063 -6.110 PB030138 Q7MX14_PORGI/1-113 PB030138; Pfam-B_30138;
JCSG0516 1-1070 -137.000 45  EL17883Y NP_976934.1 423473 Selected-2011-05-25
NEW_HUMAN_DOMAINS 909-1038 -10.900 10  sp|Q92750|TAF4B_HUMAN Transcription initiation factor TFIID subunit 4B OS=Homo sapiens GN=TAF4B PE=1 SV=2 (Range: 450-595)
PDB0516 8-781 -78.800 13  4z0c_A mol:protein length:709 Toll-like receptor 13
90-885 -82.400 15  3w3g_A mol:protein length:811 Toll-like receptor 8
282-1041 -46.800 12  4l3a_A mol:protein length:590 Internalin K
PfamA30U 577-712 -27.700 22  PF14580.4; H3BFR2_LATCH/1-175; Leucine-rich repeat
857-1068 -10.800 PF15772.3; G5CBI0_HETGA/104-332; UPF0688 topsan family
907-1066 -18.500 11  PF15677.3; H2NCC0_PONAB/1-152; Cell cycle exit and neuronal differentiation protein 1
SCOP206 210-434 -58.000 26  d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}
275-761 -79.500 28  d2omza2 c.10.2.1 (A:36-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
551-848 -38.800 19  d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
870-1057 -9.540 d2b5lc_ d.384.1.1 (C:) SV5-V core {Simian virus 5 [TaxId: 11207]}
VFDB 88-462 -44.300 14  VFG034825(gi:15802368) (espR3) Type III secretion system effector espR3 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
148-1070 -78.800 17  VFG000075(gi:16802477) (inlA) Internalin A [InlA (VF0069)] [Listeria monocytogenes EGD-e]
6 IDP00006 immune inhibitor A metalloprotease BA_0672 [Bacillus anthracis str. Ames] 799 COG0516 1-799 -172.000 35  [S] COG4412 Uncharacterized protein conserved in bacteria
H.sapiens 170-408 -9.840 14  sp|Q9Y5R2|MMP24_HUMAN Matrix metalloproteinase-24 OS=Homo sapiens GN=MMP24 PE=1 SV=1 (Range: 1-300)
HGM_OVER 10-136 -4.660 11  PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)
JCSG0516 1-799 -86.200 13  SP18191A ZP_02995891.1 410386 Selected-2009-11-12
NEW_HUMAN_DOMAINS 374-429 -5.670 18  sp|P98153|IDD_HUMAN Integral membrane protein DGCR2/IDD OS=Homo sapiens GN=DGCR2 PE=1 SV=1 (Range: 369-488)
PDB0516 50-799 -186.000 99  4yu5_A mol:protein length:756 Immune inhibitor A, metalloprotease
PfamA30U 152-795 -164.000 72  PF05547.9; C2WZ33_BACCE/147-791; Immune inhibitor A peptidase M6
SCOP206 241-436 -11.000 14  d5d7wa1 d.92.1.0 (A:4-246) automated matches {Serratia marcescens [TaxId: 615]}
311-424 -14.400 22  d1c7ka_ d.92.1.1 (A:) Zinc protease {Streptomyces caespitosus [TaxId: 53502]}
VFDB 1-799 -204.000 100  VFG016338(gi:49183663) (inhA) immune inhibitor A metalloprotease [InhA (VF0536)] [Bacillus anthracis str. Sterne]
7 IDP00007 gene: racE-1; glutamate racemase BA_0847 [Bacillus anthracis str. Ames] 276 COG0516 4-246 -69.900 29  [M] COG0796 Glutamate racemase
H.sapiens 8-185 -8.570 11  sp|Q93075|TATD2_HUMAN Putative deoxyribonuclease TATDN2 OS=Homo sapiens GN=TATDN2 PE=1 SV=2 (Range: 451-750)
HGM_OVER 20-125 -5.350 11  PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
JCSG0516 8-185 -9.300 16  TM0667 TM0667 282539 PDB-2002-07-09
NEW_HUMAN_DOMAINS 152-203 -4.120 17  sp|Q6MZT1|R7BP_HUMAN Regulator of G-protein signaling 7-binding protein OS=Homo sapiens GN=RGS7BP PE=2 SV=3 (Range: 191-257)
PDB0516 1-276 -110.000 100  2dwu_A mol:protein length:276 Glutamate racemase
PfamA30U 10-219 -88.700 37  PF01177.20; R7EMK1_9BACE/12-229; Asp/Glu/Hydantoin racemase
SCOP206 8-112 -61.400 43  d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
113-267 -56.700 33  d1b74a2 c.78.2.1 (A:106-252) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
VFDB 15-204 -6.470 11  VFG013321(gi:16272676) (lpxH) UDP-2,3-diacylglucosamine pyrophosphohydrolase [LOS (CVF494)] [Haemophilus influenzae Rd KW20]
8 IDP00008 gene: cysG; uroporphyrin-III C-methyltransferase BA_1445 [Bacillus anthracis str. Ames] 258 COG0516 2-256 -108.000 38  [H] COG0007 Uroporphyrinogen-III methylase
H.sapiens 4-256 -52.600 17  sp|Q9H2P9|DPH5_HUMAN Diphthine synthase OS=Homo sapiens GN=DPH5 PE=1 SV=2
HGM_OVER 60-251 -4.530 11  HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;
JCSG0516 2-257 -92.300 47  MJ15755B YP_386173.1 402946 Purified-2009-10-17
NEW_HUMAN_DOMAINS 39-133 -7.600 17  sp|Q6Y2X3|DJC14_HUMAN DnaJ homolog subfamily C member 14 OS=Homo sapiens GN=DNAJC14 PE=2 SV=2 (Range: 512-616)
PDB0516 2-257 -110.000 38  1s4d_A mol:protein length:280 Uroporphyrin-III C-methyltransferase
PfamA30U 3-215 -44.200 23  PF00590.18; Q3A6A0_PELCD/39-272; Tetrapyrrole (Corrin/Porphyrin) Methylases
SCOP206 2-247 -108.000 46  d1pjqa2 c.90.1.1 (A:216-457) Siroheme synthase CysG, domains 4 and 5 {Salmonella typhimurium [TaxId: 90371]}
VFDB 65-206 -7.150 11  VFG002163(gi:52840692) (icmN/dotK) Dot/Icm type IV secretion system protein IcmN/DotK [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
9 IDP00009 3-dehydroquinate synthase BA_1538 [Bacillus anthracis str. Ames] 363 COG0516 1-354 -106.000 37  [E] COG0337 3-dehydroquinate synthetase
H.sapiens 14-350 -11.400 13  sp|Q8IWW8|HOT_HUMAN(removed signalp:1-21) Hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Homo sapiens GN=ADHFE1 PE=1 SV=1
HGM_OVER 106-251 -4.320 14  PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)
JCSG0516 1-354 -91.700 25  TM0348 TM0348 282223 Purified-2001-03-14
NEW_HUMAN_DOMAINS 177-267 -5.010 15  sp|Q8TAL6|FIBIN_HUMAN Fin bud initiation factor homolog OS=Homo sapiens GN=FIBIN PE=2 SV=1 (Range: 19-124)
PDB0516 3-358 -114.000 37  1xag_A mol:protein length:354 3-dehydroquinate synthase
PfamA30U 17-269 -23.400 15  PF13685.4; Q162K0_ROSDO/40-301; Iron-containing alcohol dehydrogenase
67-324 -102.000 42  PF01761.18; AROB_SYNY3/68-330; 3-dehydroquinate synthase
SCOP206 1-360 -104.000 30  d1ujna_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Thermus thermophilus [TaxId: 274]}
VFDB 37-325 -8.780 20  VFG006717(gi:16803674) (lap) Listeria adhesion protein Lap [Lap (VF0444)] [Listeria monocytogenes EGD-e]
10 IDP00010 uroporphyrin-III C-methyltransferase, putative BA_2144 [Bacillus anthracis str. Ames] 474 COG0516 2-269 -91.800 36  [H] COG0007 Uroporphyrinogen-III methylase
246-469 -45.900 16  [H] COG1587 Uroporphyrinogen-III synthase
H.sapiens 4-256 -43.100 16  sp|Q9H2P9|DPH5_HUMAN Diphthine synthase OS=Homo sapiens GN=DPH5 PE=1 SV=2
252-474 -30.700 15  sp|P10746|HEM4_HUMAN Uroporphyrinogen-III synthase OS=Homo sapiens GN=UROS PE=1 SV=1
HGM_OVER 1-113 -3.350 17  PB012771 _Gut.Meta.Jp.0094636_ gi|162817068|dbj|BABA01027641.1||1 (+ 249:636~0 complete)
JCSG0516 2-469 -109.000 27  MI15755C YP_323976.1 397017 Purified-2009-07-24
NEW_HUMAN_DOMAINS 40-134 -5.900 17  sp|Q6Y2X3|DJC14_HUMAN DnaJ homolog subfamily C member 14 OS=Homo sapiens GN=DNAJC14 PE=2 SV=2 (Range: 512-616)
PDB0516 2-259 -92.700 37  1s4d_A mol:protein length:280 Uroporphyrin-III C-methyltransferase
226-469 -38.100 3d8n_A mol:protein length:286 Uroporphyrinogen-III synthase
PfamA30U 4-215 -39.200 24  PF00590.18; Q3A6A0_PELCD/39-272; Tetrapyrrole (Corrin/Porphyrin) Methylases
264-469 -40.900 13  PF02602.13; Q6AMG2_DESPS/275-509; Uroporphyrinogen-III synthase HemD
SCOP206 3-247 -90.900 46  d1pjqa2 c.90.1.1 (A:216-457) Siroheme synthase CysG, domains 4 and 5 {Salmonella typhimurium [TaxId: 90371]}
252-474 -31.000 15  d1jr2a_ c.113.1.1 (A:) Uroporphyrinogen III synthase (U3S, HemD) {Human (Homo sapiens) [TaxId: 9606]}
VFDB 3-295 -4.780 15  VFG015515(gi:15599409) (phzE1) phenazine biosynthesis protein PhzE [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
11 IDP00011 alcohol dehydrogenase, iron-containing BA_2222 [Bacillus anthracis str. Ames] 392 COG0516 1-379 -94.300 36  [C] KOG3857 Alcohol dehydrogenase, class IV
H.sapiens 2-380 -93.300 30  sp|Q8IWW8|HOT_HUMAN(removed signalp:1-21) Hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Homo sapiens GN=ADHFE1 PE=1 SV=1
HGM_OVER 180-280 -2.830 HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;
JCSG0516 1-379 -96.300 28  MH0111C YP_001089619.1 394407 Purified-2009-01-22
NEW_HUMAN_DOMAINS 234-356 -5.660 11  sp|Q5NDL2|AER61_HUMAN Uncharacterized glycosyltransferase AER61 OS=Homo sapiens GN=AER61 PE=2 SV=1 (Range: 402-527)
PDB0516 1-379 -99.600 39  3owo_A mol:protein length:383 Alcohol dehydrogenase 2
PfamA30U 2-371 -102.000 34  PF00465.17; Q2SC87_HAHCH/11-388; Iron-containing alcohol dehydrogenase
SCOP206 1-379 -96.500 32  d5br4a1 e.22.1.2 (A:1-383) automated matches {Escherichia coli [TaxId: 562]}
VFDB 1-381 -70.600 34  VFG006717(gi:16803674) (lap) Listeria adhesion protein Lap [Lap (VF0444)] [Listeria monocytogenes EGD-e]
12 IDP00012 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) BA_2953 [Bacillus anthracis str. Ames] 429 COG0516 8-428 -55.300 24  [E] COG0128 5-enolpyruvylshikimate-3-phosphate synthase
H.sapiens 71-387 -6.030 13  sp|P57078|RIPK4_HUMAN Receptor-interacting serine/threonine-protein kinase 4 OS=Homo sapiens GN=RIPK4 PE=1 SV=1 (Range: 301-600)
HGM_OVER 54-307 -3.590 15  PB001565 Q6LS01_PHOPR/1-384 PB001565; Pfam-B_1565;
JCSG0516 17-427 -122.000 43  TM0345 TM0345 282220 Purified-2001-03-14
NEW_HUMAN_DOMAINS 189-347 -4.140 13  sp|Q9P225|DYH2_HUMAN Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=1 SV=3 (Range: 63-237)
PDB0516 1-427 -136.000 66  3rmt_A mol:protein length:455 3-phosphoshikimate 1-carboxyvinyltransferase
PfamA30U 10-424 -24.100 22  PF00275.18; MURA_ECOLI/6-406; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
SCOP206 6-427 -128.000 41  d2pqca_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Agrobacterium sp. [TaxId: 268951]}
VFDB 229-349 -5.630 14  VFG000374(gi:16082708) (yopK/yopQ) type III secretion system effector YopK/YopQ, regulating Yops injection from within host cells [TTSS (VF0140)] [Yersinia pestis CO92]
13 IDP00013 LPXTG-motif cell wall anchor domain protein BA_3254 [Bacillus anthracis str. Ames] 372 COG0516 1-372 -28.500 [S] KOG0992 Uncharacterized conserved protein
38-372 -29.700 11  [S] COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain
H.sapiens 1-372 -35.400 10  sp|Q9Y250|LZTS1_HUMAN Leucine zipper putative tumor suppressor 1 OS=Homo sapiens GN=LZTS1 PE=1 SV=3
HGM_OVER 163-321 -7.740 10  PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]
JCSG0516 1-372 -32.200 10  TM0711 TM0711 282581 Purified-2001-10-17
NEW_HUMAN_DOMAINS 129-252 -10.400 12  sp|Q6NSX1|CCD70_HUMAN Coiled-coil domain-containing protein 70 OS=Homo sapiens GN=CCDC70 PE=2 SV=1 (Range: 59-183)
PDB0516 2-260 -19.200 10  4ux3_A mol:protein length:543 STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN
52-330 -27.500 2tma_A mol:protein length:284 TROPOMYOSIN
77-372 -23.000 12  4lin_A mol:protein length:300 Tail needle protein gp26
PfamA30U 1-372 -27.700 10  PF15921.3; G5BJQ7_HETGA/1-1111; Coiled-coil domain-containing protein 158
42-372 -31.000 14  PF15070.4; W5MC41_LEPOC/402-1036; Putative golgin subfamily A member 2-like protein 5
SCOP206 48-227 -7.480 10  d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
VFDB 1-372 -35.400 12  VFG000950(gi:21911263) (emm) M protein type 3 [M protein (VF0242)] [Streptococcus pyogenes MGAS315]
14 IDP00014 Protein recA (Recombinase A) BA_3915 [Bacillus anthracis str. Ames] 343 COG0516 2-343 -139.000 59  [L] COG0468 RecA/RadA recombinase
H.sapiens 4-271 -22.800 22  sp|O75771|RA51D_HUMAN DNA repair protein RAD51 homolog 4 OS=Homo sapiens GN=RAD51L3 PE=1 SV=1
HGM_OVER 62-147 -4.850 17  PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;
JCSG0516 2-343 -134.000 59  TM1859 TM1859 283711 Purified-2001-10-09
NEW_HUMAN_DOMAINS 43-181 -5.080 19  sp|Q709C8|VP13C_HUMAN Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1 (Range: 1239-1372)
PDB0516 2-343 -144.000 65  1ubc_A mol:protein length:349 RecA
PfamA30U 6-267 -129.000 67  PF00154.19; RECA_ACIAD/7-268; recA bacterial DNA recombination protein
SCOP206 4-266 -129.000 68  d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}
267-325 -28.700 37  d1u94a2 d.48.1.1 (A:269-328) RecA protein, C-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 54-302 -6.730 13  VFG002176(gi:21693305) (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
15 IDP00015 UDP-N-acetylenolpyruvoylglucosamine reductase 1 (UDP-N-acetylmuramate dehydrogenase 1) BA_4048 [Bacillus anthracis str. Ames] 301 COG0516 1-301 -121.000 62  [M] COG0812 UDP-N-acetylmuramate dehydrogenase
H.sapiens 2-287 -10.800 13  sp|Q8N465|D2HDH_HUMAN(removed signalp:1-22) D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Homo sapiens GN=D2HGDH PE=1 SV=3
35-195 -12.400 18  sp|O00116|ADAS_HUMAN Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo sapiens GN=AGPS PE=1 SV=1 (Range: 151-450)
HGM_OVER 67-275 -3.300 PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;
JCSG0516 18-301 -111.000 39  TM1714 TM1714 283570 Purified-2001-04-24
NEW_HUMAN_DOMAINS 97-298 -5.150 13  sp|Q9UG01|IF172_HUMAN Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2 (Range: 1539-1749)
PDB0516 1-301 -122.000 64  4pyt_A mol:protein length:309 UDP-N-acetylenolpyruvoylglucosamine reductase
PfamA30U 35-163 -15.100 14  PF01565.21; Q82SS0_NITEU/46-186; FAD binding domain
201-299 -61.700 50  PF02873.14; Q24TE7_DESHY/186-285; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
SCOP206 2-195 -73.300 39  d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
196-301 -65.900 38  d1hska2 d.146.1.1 (A:209-317) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
VFDB 1-301 -91.600 36  VFG002184(gi:29376981) (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
16 IDP00016 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase) (Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptide synthetase) BA_4053 [Bacillus anthracis str. Ames] 491 COG0516 1-488 -129.000 42  [M] COG0769 UDP-N-acetylmuramyl tripeptide synthase
H.sapiens 94-364 -24.400 12  sp|Q96DM3|MIC1_HUMAN Uncharacterized protein C18orf8 OS=Homo sapiens GN=C18orf8 PE=1 SV=2 (Range: 301-600)
96-413 -16.500 18  sp|Q05932|FOLC_HUMAN(removed signalp:1-19) Folylpolyglutamate synthase, mitochondrial OS=Homo sapiens GN=FPGS PE=1 SV=3
HGM_OVER 349-452 -2.430 PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
JCSG0516 1-491 -127.000 38  TM0237 TM0237 282116 Crystal|NMR-2003-01-20
NEW_HUMAN_DOMAINS 82-119 -4.930 22  tr|A8MWC2|A8MWC2_HUMAN Uncharacterized protein OS=Homo sapiens PE=4 SV=1 (Range: 1-77)
PDB0516 1-491 -132.000 39  4c12_A mol:protein length:501 UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--L-
PfamA30U 61-259 -15.300 PF16292.3; A9WF69_CHLAA/4-305; Domain of unknown function (DUF4938 topsan)
106-312 -81.600 37  PF08245.10; MURE_THEMA/108-304; Mur ligase middle domain
332-418 -55.200 46  PF02875.19; MURE_HELPY/294-375; Mur ligase family, glutamate ligase domain
SCOP206 2-96 -36.500 31  d1e8ca1 c.98.1.1 (A:3-103) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}
97-331 -74.700 31  d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}
332-486 -72.800 42  d1e8ca2 c.59.1.1 (A:338-494) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}
VFDB 20-483 -23.400 11  VFG000682(gi:6470209) (capB) CapB, involved in Poly-gamma-glutamate synthesis [Capsule (VF0141)] [Bacillus anthracis]
17 IDP00017 gene: ribBA; Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase); GTP cyclohydrolase-2 (GTP cyclohydrolase II)] BA_4333 [Bacillus anthracis str. Ames] 397 COG0516 2-397 -108.000 50  [H] KOG1284 Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase
H.sapiens 217-320 -6.190 17  sp|P07202|PERT_HUMAN(removed signalp:1-18) Thyroid peroxidase OS=Homo sapiens GN=TPO PE=1 SV=4 (Range: 751-915)
HGM_OVER 186-316 -2.900 PB008806 Q5L9W8_BACFN/1-127 PB008806; Pfam-B_8806;
JCSG0516 2-396 -131.000 61  MJ1826A YP_384582.1 402931 Purified-2009-10-17
NEW_HUMAN_DOMAINS 189-317 -4.780 14  tr|B8ZZQ8|B8ZZQ8_HUMAN Putative uncharacterized protein MGC72075 OS=Homo sapiens GN=C7orf46 PE=4 SV=1 (Range: 1-150)
PDB0516 2-396 -117.000 57  4i14_A mol:protein length:425 Riboflavin biosynthesis protein RibBA
PfamA30U 6-196 -87.300 53  PF00926.17; R7D2C4_9BACE/10-201; 3,4-dihydroxy-2-butanone 4-phosphate synthase
205-371 -89.900 57  PF00925.18; G4T1J0_META2/10-176; GTP cyclohydrolase II
SCOP206 2-204 -83.500 44  d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Fungus (Magnaporthe grisea) [TaxId: 148305]}
204-374 -88.900 56  d2bz1a_ c.144.1.1 (A:) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]}
VFDB 288-370 -4.340 16  VFG045571(gi:52842629) (lpg2420) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
18 IDP00018 gene: racE-2; glutamate racemase BA_4717 [Bacillus anthracis str. Ames] 269 COG0516 1-266 -71.100 24  [M] COG0796 Glutamate racemase
H.sapiens 5-182 -8.580 17  sp|Q93075|TATD2_HUMAN Putative deoxyribonuclease TATDN2 OS=Homo sapiens GN=TATDN2 PE=1 SV=2 (Range: 451-750)
HGM_OVER 17-122 -5.280 13  PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
JCSG0516 5-182 -9.360 19  TM0667 TM0667 282539 PDB-2002-07-09
NEW_HUMAN_DOMAINS 149-200 -4.230 23  sp|Q6MZT1|R7BP_HUMAN Regulator of G-protein signaling 7-binding protein OS=Homo sapiens GN=RGS7BP PE=2 SV=3 (Range: 191-257)
PDB0516 2-268 -108.000 100  2gzm_A mol:protein length:267 Glutamate racemase
PfamA30U 7-216 -89.200 39  PF01177.20; R7EMK1_9BACE/12-229; Asp/Glu/Hydantoin racemase
SCOP206 5-109 -62.900 46  d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
110-266 -55.600 33  d1b74a2 c.78.2.1 (A:106-252) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
VFDB 12-201 -6.510 10  VFG013321(gi:16272676) (lpxH) UDP-2,3-diacylglucosamine pyrophosphohydrolase [LOS (CVF494)] [Haemophilus influenzae Rd KW20]
19 IDP00019 gene: pykA-2; pyruvate kinase BA_4843 [Bacillus anthracis str. Ames] 585 COG0516 1-472 -126.000 45  [G] KOG2323 Pyruvate kinase
475-585 -45.100 63  [T] COG3848 Phosphohistidine swiveling domain
H.sapiens 1-472 -127.000 44  sp|P14618|KPYM_HUMAN Pyruvate kinase isozymes M1/M2 OS=Homo sapiens GN=PKM2 PE=1 SV=4
HGM_OVER 143-373 -4.270 14  HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411;
JCSG0516 1-472 -135.000 43  TM0208 TM0208 282088 Structure-2005-02-03
44-585 -10.600 15  TM0272 TM0272 282149 Selected-2001-10-12
352-532 -16.300 11  TB0885A NP_068944.1 356685 PDB-2004-10-14
NEW_HUMAN_DOMAINS 125-338 -6.160 16  sp|Q7Z2Z1|TICRR_HUMAN Treslin OS=Homo sapiens GN=TICRR PE=1 SV=2 (Range: 277-506)
PDB0516 1-585 -165.000 69  2e28_A mol:protein length:587 Pyruvate kinase
PfamA30U 1-343 -107.000 49  PF00224.19; KPYK_EMENI/32-379; Pyruvate kinase, barrel domain
356-469 -46.800 28  PF02887.14; D5C1C2_NITHN/363-477; Pyruvate kinase, alpha/beta domain
509-575 -14.400 40  PF00391.21; I4BU05_ANAMD/423-506; PEP-utilising enzyme, mobile domain
SCOP206 1-344 -83.300 54  d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
352-532 -16.300 11  d1vp8a1 c.49.1.2 (A:1-189) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]}
354-472 -51.100 34  d1e0ta3 c.49.1.1 (A:354-470) Pyruvate kinase, C-terminal domain {Escherichia coli [TaxId: 562]}
473-581 -16.200 30  d1kbla2 c.8.1.1 (A:377-509) Pyruvate phosphate dikinase, central domain {Clostridium symbiosum [TaxId: 1512]}
VFDB 79-545 -5.830 12  VFG001448(gi:409035) (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
20 IDP00020 UDP-N-acetylenolpyruvoylglucosamine reductase 2 (UDP-N-acetylmuramate dehydrogenase 2) BA_5315 [Bacillus anthracis str. Ames] 305 COG0516 7-303 -112.000 40  [M] COG0812 UDP-N-acetylmuramate dehydrogenase
H.sapiens 4-288 -12.100 15  sp|Q8N465|D2HDH_HUMAN(removed signalp:1-22) D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Homo sapiens GN=D2HGDH PE=1 SV=3
38-196 -13.200 20  sp|O00116|ADAS_HUMAN Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo sapiens GN=AGPS PE=1 SV=1 (Range: 151-450)
HGM_OVER 70-276 -3.550 PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;
JCSG0516 21-305 -111.000 40  TM1714 TM1714 283570 Purified-2001-04-24
NEW_HUMAN_DOMAINS 99-283 -5.230 15  sp|Q9UG01|IF172_HUMAN Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2 (Range: 1539-1749)
PDB0516 1-305 -117.000 59  1hsk_A mol:protein length:326 UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCTASE
PfamA30U 38-165 -16.000 20  PF01565.21; Q82SS0_NITEU/46-186; FAD binding domain
202-300 -60.900 52  PF02873.14; Q24TE7_DESHY/186-285; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
SCOP206 3-196 -79.900 50  d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
197-305 -67.600 78  d1hska2 d.146.1.1 (A:209-317) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
VFDB 2-305 -94.600 38  VFG002184(gi:29376981) (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]