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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 8581next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 [H] COG0001 Glutamate-1-semialdehyde aminotransferase 411 SCOP206 1-411 -129.000 43  d2epja_ c.67.1.0 (A:) automated matches {Aeropyrum pernix [TaxId: 272557]}
2 [E] COG0002 Acetylglutamate semialdehyde dehydrogenase 336 SCOP206 1-180 -64.500 37  d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}
144-304 -84.000 35  d2cvoa2 d.81.1.1 (A:219-383) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}
3 [P] COG0003 Oxyanion-translocating ATPase 396 SCOP206 2-305 -66.100 26  d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
325-396 -12.000 27  d4elda_ b.15.1.1 (A:) Small heat shock protein {Methanococcus jannaschii [TaxId: 2190]}
4 [P] COG0004 Ammonia permease 470 SCOP206 35-461 -116.000 44  d2b2ha_ f.44.1.0 (A:) automated matches {Archaeoglobus fulgidus [TaxId: 2234]}
5 [F] COG0005 Purine nucleoside phosphorylase 271 SCOP206 7-270 -111.000 41  d4uc0a_ c.56.2.0 (A:) automated matches {Agrobacterium vitis [TaxId: 373]}
6 [E] COG0006 Xaa-Pro aminopeptidase 356 SCOP206 9-127 -23.400 20  d1pv9a1 c.55.2.1 (A:8-124) Aminopeptidase P {Pyrococcus furiosus [TaxId: 2261]}
128-348 -98.700 36  d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Pyrococcus furiosus [TaxId: 2261]}
7 [H] COG0007 Uroporphyrinogen-III methylase 292 SCOP206 25-270 -104.000 44  d1pjqa2 c.90.1.1 (A:216-457) Siroheme synthase CysG, domains 4 and 5 {Salmonella typhimurium [TaxId: 90371]}
8 [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases 554 SCOP206 7-339 -133.000 65  d5bnza1 c.26.1.0 (A:8-340) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}
340-551 -83.400 53  d5bnza2 b.53.1.0 (A:341-555) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}
9 [J] COG0009 Putative translation factor (SUA5) 346 SCOP206 6-217 -80.400 26  d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
10 [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 306 SCOP206 11-305 -117.000 38  d1gq6a_ c.42.1.1 (A:) Proclavaminate amidino hydrolase {Streptomyces clavuligerus [TaxId: 1901]}
11 [S] COG0011 Uncharacterized conserved protein 94 SCOP206 3-94 -52.800 100  d1vk8a_ d.58.48.1 (A:) Hypothetical protein TM0486 {Thermotoga maritima [TaxId: 2336]}
12 [J] COG0012 Predicted GTPase, probable translation factor 397 SCOP206 1-319 -119.000 87  d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}
320-395 -36.400 90  d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}
13 [J] COG0013 Alanyl-tRNA synthetase 872 SCOP206 3-248 -92.900 48  d1yfsa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
249-461 -80.300 41  d1yfsa1 a.203.1.1 (A:237-453) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
487-554 -17.100 35  d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
559-700 -52.400 25  d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Pyrococcus horikoshii [TaxId: 53953]}
14 [E] COG0014 Gamma-glutamyl phosphate reductase 417 SCOP206 2-416 -132.000 46  d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]}
15 [F] COG0015 Adenylosuccinate lyase 431 SCOP206 2-429 -133.000 48  d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]}
16 [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit 344 SCOP206 6-91 -38.800 33  d3pcoc1 a.2.7.0 (C:5-90) automated matches {Escherichia coli [TaxId: 562]}
82-344 -120.000 71  d2rhqa1 d.104.1.0 (A:84-351) automated matches {Staphylococcus haemolyticus [TaxId: 1283]}
17 [J] COG0017 Aspartyl/asparaginyl-tRNA synthetases 430 SCOP206 9-101 -32.600 35  d1x54a1 b.40.4.0 (A:1-104) automated matches {Pyrococcus horikoshii [TaxId: 53953]}
100-430 -119.000 48  d1x54a2 d.104.1.0 (A:105-434) automated matches {Pyrococcus horikoshii [TaxId: 53953]}
18 [J] COG0018 Arginyl-tRNA synthetase 556 SCOP206 11-109 -20.600 19  d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal `additional` domain {Thermus thermophilus [TaxId: 274]}
117-427 -35.700 22  d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}
436-556 -54.300 35  d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
19 [E] COG0019 Diaminopimelate decarboxylase 436 SCOP206 39-302 -98.100 40  d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]}
258-434 -76.700 37  d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]}
20 [I] COG0020 Undecaprenyl pyrophosphate synthase 248 SCOP206 13-235 -116.000 35  d3ugsa_ c.101.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.