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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 8581next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 [H] COG0001 Glutamate-1-semialdehyde aminotransferase 411 JCSG0516 9-411 -42.800 27  TM1785 TM1785 283638 PDB-2007-02-02
2 [E] COG0002 Acetylglutamate semialdehyde dehydrogenase 336 JCSG0516 1-336 -115.000 42  TM1782 TM1782 283635 PDB-2004-06-11
3 [P] COG0003 Oxyanion-translocating ATPase 396 JCSG0516 1-307 -20.000 14  NT12379B NP_342742.1 378823 Crystal|NMR-2008-05-22
296-396 -10.700 17  TM0374 TM0374 282249 Purified-2001-03-14
4 [P] COG0004 Ammonia permease 470 JCSG0516 11-461 -71.000 33  TM0402 TM0402 282275 Diffraction|HSQC-2005-02-10
5 [F] COG0005 Purine nucleoside phosphorylase 271 JCSG0516 1-270 -117.000 46  TM1596 TM1596 283453 PDB-2004-09-30
6 [E] COG0006 Xaa-Pro aminopeptidase 356 JCSG0516 3-356 -113.000 29  TM0042 TM0042 281923 Purified-2001-01-30
7 [H] COG0007 Uroporphyrinogen-III methylase 292 JCSG0516 17-291 -89.800 42  MJ15755B YP_386173.1 402946 Purified-2009-10-17
8 [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases 554 JCSG0516 11-512 -26.600 15  TM1875 TM1875 283727 Selected-2001-10-12
28-356 -26.800 23  TM1351 TM1351 283212 PDB-2006-12-06
9 [J] COG0009 Putative translation factor (SUA5) 346 JCSG0516 3-344 -114.000 41  TM0852 TM0852 282722 Crystal|NMR-2002-06-20
10 [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 306 JCSG0516 38-241 -12.500 RH20225A NP_349254.1 415789 Selected-2009-12-04
84-298 -18.000 14  RH20124A NP_988387.1 415575 Selected-2009-12-04
11 [S] COG0011 Uncharacterized conserved protein 94 JCSG0516 1-94 -56.400 100  TM0486 TM0486 282359 PDB-2004-05-05
12 [J] COG0012 Predicted GTPase, probable translation factor 397 JCSG0516 3-396 -80.900 23  TM1240 TM1240 283105 Purified-2001-12-19
13 [J] COG0013 Alanyl-tRNA synthetase 872 JCSG0516 1-871 -229.000 40  TM1396 TM1396 283257 Selected-2001-10-12
14 [E] COG0014 Gamma-glutamyl phosphate reductase 417 JCSG0516 2-416 -132.000 46  TM0293 TM0293 282169 PDB-2003-02-12
15 [F] COG0015 Adenylosuccinate lyase 431 JCSG0516 24-384 -26.800 18  TM1781 TM1781 354159 Crystal|NMR-2003-01-07
16 [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit 344 JCSG0516 4-341 -126.000 50  TM0821 TM0821 282691 Purified-2001-04-19
17 [J] COG0017 Aspartyl/asparaginyl-tRNA synthetases 430 JCSG0516 9-426 -36.300 26  TM1441 TM1441 283300 Selected-2001-10-12
18 [J] COG0018 Arginyl-tRNA synthetase 556 JCSG0516 11-556 -156.000 45  TM1093 TM1093 282959 Purified-2001-12-12
19 [E] COG0019 Diaminopimelate decarboxylase 436 JCSG0516 23-433 -75.400 32  TM1517 TM1517 283374 Purified-2002-01-08
20 [I] COG0020 Undecaprenyl pyrophosphate synthase 248 JCSG0516 13-239 -111.000 51  TM1398 TM1398 283259 Purified-2001-10-16


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.