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anford Burnham Prebys Medical Discovery Institute
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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 8581next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 [H] COG0001 Glutamate-1-semialdehyde aminotransferase 411 H.sapiens 18-411 -38.100 23  sp|Q9BYV1|AGT2_HUMAN(removed signalp:1-24) Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo sapiens GN=AGXT2 PE=1 SV=1
2 [E] COG0002 Acetylglutamate semialdehyde dehydrogenase 336 H.sapiens 2-199 -8.080 15  sp|Q9UDR5|AASS_HUMAN Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Homo sapiens GN=AASS PE=1 SV=1 (Range: 451-750)
3 [P] COG0003 Oxyanion-translocating ATPase 396 H.sapiens 1-314 -72.000 21  sp|O43681|ASNA_HUMAN ATPase ASNA1 OS=Homo sapiens GN=ASNA1 PE=1 SV=2
320-396 -10.400 13  sp|Q8NBF4|YG006_HUMAN Putative uncharacterized protein FLJ33307 OS=Homo sapiens PE=5 SV=1
4 [P] COG0004 Ammonia permease 470 H.sapiens 62-460 -57.000 13  sp|P18577|RHCE_HUMAN(removed signalp:1-36) Blood group Rh(CE) polypeptide OS=Homo sapiens GN=RHCE PE=1 SV=2
5 [F] COG0005 Purine nucleoside phosphorylase 271 H.sapiens 2-271 -109.000 46  sp|P00491|PNPH_HUMAN Purine nucleoside phosphorylase OS=Homo sapiens GN=PNP PE=1 SV=2
6 [E] COG0006 Xaa-Pro aminopeptidase 356 H.sapiens 3-356 -53.200 21  sp|Q9NQH7|XPP3_HUMAN Probable Xaa-Pro aminopeptidase 3 OS=Homo sapiens GN=XPNPEP3 PE=1 SV=1
105-356 -61.200 18  sp|Q9Y5B9|SP16H_HUMAN FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1 (Range: 151-450)
7 [H] COG0007 Uroporphyrinogen-III methylase 292 H.sapiens 27-269 -52.200 12  sp|Q9H2P9|DPH5_HUMAN Diphthine synthase OS=Homo sapiens GN=DPH5 PE=1 SV=2
8 [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases 554 H.sapiens 2-286 -103.000 41  sp|P07814|SYEP_HUMAN Bifunctional aminoacyl-tRNA synthetase OS=Homo sapiens GN=EPRS PE=1 SV=5 (Range: 151-450)
65-374 -112.000 49  sp|P47897|SYQ_HUMAN Glutaminyl-tRNA synthetase OS=Homo sapiens GN=QARS PE=1 SV=1 (Range: 301-600)
225-525 -100.000 42  sp|P47897|SYQ_HUMAN Glutaminyl-tRNA synthetase OS=Homo sapiens GN=QARS PE=1 SV=1 (Range: 451-750)
9 [J] COG0009 Putative translation factor (SUA5) 346 H.sapiens 1-224 -69.700 27  sp|Q86U90|YRDC_HUMAN YrdC domain-containing protein, mitochondrial OS=Homo sapiens GN=YRDC PE=1 SV=1
10 [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 306 H.sapiens 2-305 -111.000 37  sp|Q9BSE5|SPEB_HUMAN Agmatinase, mitochondrial OS=Homo sapiens GN=AGMAT PE=1 SV=2
11 [S] COG0011 Uncharacterized conserved protein 94 H.sapiens 11-94 -6.740 sp|Q9NPG3|UBN1_HUMAN Ubinuclein-1 OS=Homo sapiens GN=UBN1 PE=1 SV=2 (Range: 151-450)
12 [J] COG0012 Predicted GTPase, probable translation factor 397 H.sapiens 1-396 -78.200 26  sp|Q9NTK5|OLA1_HUMAN Obg-like ATPase 1 OS=Homo sapiens GN=OLA1 PE=1 SV=2
13 [J] COG0013 Alanyl-tRNA synthetase 872 H.sapiens 2-282 -78.200 42  sp|P49588|SYAC_HUMAN Alanyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2 (Range: 1-300)
135-432 -85.900 38  sp|P49588|SYAC_HUMAN Alanyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2 (Range: 151-450)
283-560 -70.700 33  sp|P49588|SYAC_HUMAN Alanyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2 (Range: 301-600)
467-872 -53.800 21  sp|Q9BTE6|AASD1_HUMAN Alanyl-tRNA editing protein Aarsd1 OS=Homo sapiens GN=AARSD1 PE=1 SV=2
535-822 -73.000 24  sp|Q5JTZ9|SYAM_HUMAN Alanyl-tRNA synthetase, mitochondrial OS=Homo sapiens GN=AARS2 PE=1 SV=1 (Range: 601-900)
14 [E] COG0014 Gamma-glutamyl phosphate reductase 417 H.sapiens 2-241 -69.400 34  sp|P54886|P5CS_HUMAN Delta-1-pyrroline-5-carboxylate synthase OS=Homo sapiens GN=ALDH18A1 PE=1 SV=2 (Range: 301-600)
90-395 -101.000 36  sp|P54886|P5CS_HUMAN Delta-1-pyrroline-5-carboxylate synthase OS=Homo sapiens GN=ALDH18A1 PE=1 SV=2 (Range: 451-750)
15 [F] COG0015 Adenylosuccinate lyase 431 H.sapiens 1-429 -73.200 27  sp|P30566|PUR8_HUMAN Adenylosuccinate lyase OS=Homo sapiens GN=ADSL PE=1 SV=2
16 [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit 344 H.sapiens 21-342 -78.300 27  sp|O95363|SYFM_HUMAN Phenylalanyl-tRNA synthetase, mitochondrial OS=Homo sapiens GN=FARS2 PE=1 SV=1
17 [J] COG0017 Aspartyl/asparaginyl-tRNA synthetases 430 H.sapiens 2-430 -118.000 32  sp|O43776|SYNC_HUMAN Asparaginyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=NARS PE=1 SV=1
18 [J] COG0018 Arginyl-tRNA synthetase 556 H.sapiens 7-556 -56.500 19  sp|Q5T160|SYRM_HUMAN Probable arginyl-tRNA synthetase, mitochondrial OS=Homo sapiens GN=RARS2 PE=1 SV=1
19 [E] COG0019 Diaminopimelate decarboxylase 436 H.sapiens 23-424 -38.400 19  sp|Q96A70|ADC_HUMAN Arginine decarboxylase OS=Homo sapiens GN=ADC PE=2 SV=1
20 [I] COG0020 Undecaprenyl pyrophosphate synthase 248 H.sapiens 1-248 -98.600 32  sp|Q86SQ9|DHDDS_HUMAN Dehydrodolichyl diphosphate synthase OS=Homo sapiens GN=DHDDS PE=2 SV=3


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.