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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 8581next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 [H] COG0001 Glutamate-1-semialdehyde aminotransferase 411 COG0516 12-411 -43.300 24  [E] COG4992 Ornithine/acetylornithine aminotransferase
2 [E] COG0002 Acetylglutamate semialdehyde dehydrogenase 336 COG0516 1-331 -102.000 32  [E] KOG4354 N-acetyl-gamma-glutamyl-phosphate reductase
3 [P] COG0003 Oxyanion-translocating ATPase 396 COG0516 1-313 -69.700 23  [P] KOG2825 Putative arsenite-translocating ATPase
4 [P] COG0004 Ammonia permease 470 COG0516 24-462 -108.000 36  [P] KOG0682 Ammonia permease
5 [F] COG0005 Purine nucleoside phosphorylase 271 COG0516 2-271 -109.000 46  [F] KOG3984 Purine nucleoside phosphorylase
6 [E] COG0006 Xaa-Pro aminopeptidase 356 COG0516 3-356 -53.200 21  [E] KOG2414 Putative Xaa-Pro aminopeptidase
7 [H] COG0007 Uroporphyrinogen-III methylase 292 COG0516 5-266 -73.600 27  [H] KOG1527 Uroporphyrin III methyltransferase
8 [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases 554 COG0516 3-553 -145.000 42  [J] KOG1148 Glutaminyl-tRNA synthetase
9 [J] COG0009 Putative translation factor (SUA5) 346 COG0516 1-346 -106.000 43  [J] KOG3051 RNA binding/translational regulation protein of the SUA5 family
10 [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 306 COG0516 2-305 -106.000 35  [E] KOG2964 Arginase family protein
11 [S] COG0011 Uncharacterized conserved protein 94 COG0516 18-89 -6.000 15  [J] KOG2916 Translation initiation factor 2, alpha subunit (eIF-2alpha)
12 [J] COG0012 Predicted GTPase, probable translation factor 397 COG0516 1-396 -76.000 22  [R] KOG1491 Predicted GTP-binding protein (ODN superfamily)
13 [J] COG0013 Alanyl-tRNA synthetase 872 COG0516 1-872 -176.000 34  [J] KOG0188 Alanyl-tRNA synthetase
14 [E] COG0014 Gamma-glutamyl phosphate reductase 417 COG0516 4-417 -117.000 38  [E] KOG4165 Gamma-glutamyl phosphate reductase
15 [F] COG0015 Adenylosuccinate lyase 431 COG0516 1-429 -74.400 24  [F] KOG2700 Adenylosuccinate lyase
16 [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit 344 COG0516 1-342 -68.000 21  [J] COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type)
56-343 -70.300 25  [J] KOG2783 Phenylalanyl-tRNA synthetase
17 [J] COG0017 Aspartyl/asparaginyl-tRNA synthetases 430 COG0516 2-430 -117.000 34  [J] KOG0555 Asparaginyl-tRNA synthetase
18 [J] COG0018 Arginyl-tRNA synthetase 556 COG0516 1-556 -56.900 25  [J] KOG1195 Arginyl-tRNA synthetase
19 [E] COG0019 Diaminopimelate decarboxylase 436 COG0516 19-423 -37.300 22  [E] KOG0622 Ornithine decarboxylase
20 [I] COG0020 Undecaprenyl pyrophosphate synthase 248 COG0516 2-246 -97.700 30  [I] KOG1602 Cis-prenyltransferase


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.