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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 968next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15604718|ref|NP_219502.1| hypothetical protein (CT875) [Chlamydia trachomatis D/UW-3/CX] 591 HGM_OVER 122-310 -3.930 13  PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;
2 gi|15604719|ref|NP_219503.1| hypothetical protein (CT001) [Chlamydia trachomatis D/UW-3/CX] 90 HGM_OVER 1-63 -6.170 PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;
3 gi|15604720|ref|NP_219504.1| aspartyl/glutamyl-tRNA amidotransferase subunit C (CT002) [Chlamydia trachomatis D/UW-3/CX] 100 HGM_OVER 2-92 -3.680 14  PB012108 A3U600_9FLAO/1-189 PB012108; Pfam-B_12108;
4 gi|15604721|ref|NP_219505.1| aspartyl/glutamyl-tRNA amidotransferase subunit A (CT003) [Chlamydia trachomatis D/UW-3/CX] 491 HGM_OVER 266-395 -2.950 PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;
5 gi|15604722|ref|NP_219506.1| aspartyl/glutamyl-tRNA amidotransferase subunit B (CT004) [Chlamydia trachomatis D/UW-3/CX] 488 HGM_OVER 151-336 -2.470 12  HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397;
6 gi|15604723|ref|NP_219507.1| hypothetical protein (CT005) [Chlamydia trachomatis D/UW-3/CX] 363 HGM_OVER 38-156 -7.100 16  HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;
7 gi|15604724|ref|NP_219508.1| hypothetical protein (CT006) [Chlamydia trachomatis D/UW-3/CX] 189 HGM_OVER 39-124 -4.730 19  HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;
8 gi|15604725|ref|NP_219509.1| hypothetical protein (CT007) [Chlamydia trachomatis D/UW-3/CX] 316 HGM_OVER 172-316 -7.640 10  PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;
9 gi|15604726|ref|NP_219510.1| ribonuclease HIII (CT008) [Chlamydia trachomatis D/UW-3/CX] 300 HGM_OVER 122-271 -2.870 HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074;
10 gi|15604727|ref|NP_219511.1| HTH transcriptional regulator (CT009) [Chlamydia trachomatis D/UW-3/CX] 143 HGM_OVER 2-105 -4.510 16  PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;
11 gi|15604728|ref|NP_219512.1| lipid A biosynthesis lauroyl acyltransferase (CT010) [Chlamydia trachomatis D/UW-3/CX] 455 HGM_OVER 278-454 -4.860 10  PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]
12 gi|15604729|ref|NP_219513.1| hypothetical protein (CT011) [Chlamydia trachomatis D/UW-3/CX] 418 HGM_OVER 8-170 -3.990 PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]
13 gi|15604730|ref|NP_219514.1| hypothetical protein (CT012) [Chlamydia trachomatis D/UW-3/CX] 264 HGM_OVER 105-216 -4.870 PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;
14 gi|15604731|ref|NP_219515.1| cytochrome d ubiquinol oxidase subunit I (CT013) [Chlamydia trachomatis D/UW-3/CX] 446 HGM_OVER 383-446 -3.810 14  PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;
15 gi|15604732|ref|NP_219516.1| cytochrome d ubiquinol oxidase subunit II (CT014) [Chlamydia trachomatis D/UW-3/CX] 353 HGM_OVER 47-138 -3.220 10  HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397;
16 gi|15604733|ref|NP_219517.1| ATPase (CT015) [Chlamydia trachomatis D/UW-3/CX] 434 HGM_OVER 253-433 -2.850 HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;
17 gi|15604734|ref|NP_219518.1| hypothetical protein (CT016) [Chlamydia trachomatis D/UW-3/CX] 242 HGM_OVER 44-215 -3.960 12  PB012386 gi|82541244|ref|XP_724876.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii str. 17XNL]gi|23479680|gb|EAA16441.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii]
18 gi|15604735|ref|NP_219519.1| hypothetical protein (CT017) [Chlamydia trachomatis D/UW-3/CX] 433 HGM_OVER 40-160 -6.150 14  PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;
19 gi|15604736|ref|NP_219520.1| hypothetical protein (CT018) [Chlamydia trachomatis D/UW-3/CX] 157 HGM_OVER 29-108 -4.740 13  PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF
20 gi|15604737|ref|NP_219521.1| isoleucyl-tRNA synthetase (CT019) [Chlamydia trachomatis D/UW-3/CX] (Range: 1-500) 500 HGM_OVER 185-314 -2.850 12  PB039305 _Gut.Meta.Jp.0057508_ gi|162726131|dbj|BAAY01002830.1||2 (- 1092:1581~0 complete)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]