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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 3877next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 ACL93468.1 301 SCOP206 171-298 -9.280 15  d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}
2 ACL93469.1 199 SCOP206 4-199 -80.500 30  d4jhca_ c.51.4.0 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}
3 ACL93470.1 285 SCOP206 9-109 -52.400 35  d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}
110-285 -70.300 29  d3dona2 c.2.1.7 (A:100-269) Shikimate 5-dehydrogenase AroE {Staphylococcus epidermidis [TaxId: 176279]}
4 ACL93471.1 199 SCOP206 1-195 -93.100 34  d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}
5 ACL93472.1 237 SCOP206 1-169 -105.000 46  d2guia_ c.55.3.5 (A:) automated matches {Escherichia coli [TaxId: 562]}
6 ACL93473.1 262 SCOP206 4-261 -118.000 45  d2pbpa_ c.14.1.0 (A:) automated matches {Geobacillus kaustophilus [TaxId: 235909]}
7 ACL93474.1 96 SCOP206 8-92 -53.300 37  d2qalt1 a.7.6.1 (T:2-86) Ribosomal protein S20 {Escherichia coli [TaxId: 562]}
8 ACL93475.1 490 SCOP206 147-368 -85.300 30  d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
397-490 -47.700 61  d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
9 ACL93476.1 206 SCOP206 7-204 -103.000 39  d4jhta_ b.82.2.10 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}
10 ACL93477.1 631 SCOP206 4-180 -73.100 32  d4gnia1 c.55.1.0 (A:13-196) automated matches {Chaetomium thermophilum [TaxId: 759272]}
183-377 -65.000 50  d3i33a2 c.55.1.1 (A:190-384) automated matches {Human (Homo sapiens) [TaxId: 9606]}
384-501 -74.900 72  d4f01a1 b.130.1.1 (A:389-506) automated matches {Escherichia coli K-12 [TaxId: 83333]}
502-597 -41.300 52  d4f01a2 a.8.4.1 (A:507-602) automated matches {Escherichia coli K-12 [TaxId: 83333]}
11 ACL93478.1 385 SCOP206 1-78 -44.800 35  d2yuaa1 a.2.3.0 (A:8-93) automated matches {Human (Homo sapiens) [TaxId: 9606]}
1-110 -33.700 18  d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}
135-213 -44.500 55  d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
191-258 -13.900 26  d2q2ga1 b.4.1.0 (A:4-86) automated matches {Cryptosporidium parvum [TaxId: 353152]}
259-356 -20.100 23  d3agxa2 b.4.1.0 (A:246-340) automated matches {Human (Homo sapiens) [TaxId: 9606]}
12 ACL93479.1 903 SCOP206 10-129 -66.900 51  d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I {Escherichia coli [TaxId: 562]}
130-285 -41.500 23  d1wb9a3 c.55.6.1 (A:117-269) DNA repair protein MutS, domain II {Escherichia coli [TaxId: 562]}
286-600 -76.100 30  d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III {Escherichia coli [TaxId: 562]}
601-841 -98.700 50  d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}
13 ACL93480.1 940 SCOP206 71-201 -12.000 11  d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
210-351 -10.500 13  d1v4aa1 a.24.16.4 (A:287-437) Glutamine synthase adenylyltransferase GlnE, domain 2 {Escherichia coli [TaxId: 562]}
391-627 -11.500 15  d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]}
464-679 -10.900 15  d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]}
14 ACL93481.1 158 SCOP206 12-155 -96.000 59  d3jqka_ d.58.21.0 (A:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
15 ACL93482.1 183 SCOP206 12-179 -101.000 41  d1mkza1 c.57.1.1 (A:3-170) MoaB {Escherichia coli [TaxId: 562]}
16 ACL93483.1 150 SCOP206 1-146 -89.200 45  d1fm0e_ d.41.5.1 (E:) Molybdopterin synthase subunit MoaE {Escherichia coli [TaxId: 562]}
17 ACL93484.1 79 SCOP206 1-79 -53.800 29  d1fm0d_ d.15.3.1 (D:) Molybdopterin synthase subunit MoaD {Escherichia coli [TaxId: 562]}
18 ACL93485.1 349 SCOP206 21-342 -99.700 33  d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]}
19 ACL93486.1 210 SCOP206 1-197 -32.600 17  d2e8ba_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Aquifex aeolicus [TaxId: 224324]}
20 ACL93487.1 74 SCOP206 1-70 -6.590 17  d2hjsa2 d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.