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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4053next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15894240|ref|NP_347589.1| hypothetical protein (CA_C0953) [Clostridium acetobutylicum ATCC 824] (Range: 1-132) 132 NEW_HUMAN_DOMAINS 93-132 -6.720 22  tr|F8VX10|F8VX10_HUMAN Uncharacterized protein OS=Homo sapiens GN=C12orf41 PE=4 SV=1 (Range: 328-409)
2 gi|15895268|ref|NP_348617.1| ABC-type transport system, ATPase component (CA_C1998) [Clostridium acetobutylicum ATCC 824] (Range: 1-224) 224 NEW_HUMAN_DOMAINS 7-51 -7.190 sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3 (Range: 217-335)
3 gi|15895079|ref|NP_348428.1| ribosome-binding factor A (CA_C1803) [Clostridium acetobutylicum ATCC 824] (Range: 1-121) 121 NEW_HUMAN_DOMAINS 2-60 -6.960 16  sp|Q9H2U1|DHX36_HUMAN Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=2 (Range: 935-1008)
4 gi|15896238|ref|NP_349587.1| dimethyladenosine transferase (CA_C2986) [Clostridium acetobutylicum ATCC 824] (Range: 1-276) 276 NEW_HUMAN_DOMAINS 70-188 -6.520 12  sp|Q68CP4|HGNAT_HUMAN Heparan-alpha-glucosaminide N-acetyltransferase OS=Homo sapiens GN=HGSNAT PE=1 SV=2 (Range: 59-193)
5 gi|15894673|ref|NP_348022.1| phosphoribosylglycinamide formyltransferase (CA_C1394) [Clostridium acetobutylicum ATCC 824] (Range: 1-204) 204 NEW_HUMAN_DOMAINS 83-146 -6.590 21  sp|Q8IWZ3|ANKH1_HUMAN Ankyrin repeat and KH domain-containing protein 1 OS=Homo sapiens GN=ANKHD1 PE=1 SV=1 (Range: 2450-2542)
6 gi|15894664|ref|NP_348013.1| Alpha-ribazole-5'-phosphate phosphatase, CobC (CA_C1385) [Clostridium acetobutylicum ATCC 824] (Range: 1-191) 191 NEW_HUMAN_DOMAINS 49-103 -6.940 12  sp|Q6L9W6|B4GN3_HUMAN N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 2 OS=Homo sapiens GN=B4GALNT3 PE=1 SV=2 (Range: 327-408)
7 gi|15894369|ref|NP_347718.1| Beta-glucosidase family protein (CA_C1084) [Clostridium acetobutylicum ATCC 824] (Range: 1-474) 474 NEW_HUMAN_DOMAINS 388-454 -6.440 11  sp|A6NFU0|F187A_HUMAN Ig-like V-type domain-containing protein FAM187A OS=Homo sapiens GN=FAM187A PE=3 SV=1 (Range: 142-237)
8 gi|15896898|ref|NP_350247.1| alpha/beta fold family hydrolase (CA_C3665) [Clostridium acetobutylicum ATCC 824] (Range: 1-265) 265 NEW_HUMAN_DOMAINS 5-77 -8.940 12  tr|F8WBB3|F8WBB3_HUMAN Uncharacterized protein OS=Homo sapiens GN=ABHD1 PE=4 SV=1 (Range: 22-102)
9 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 1-500) 500 NEW_HUMAN_DOMAINS 324-406 -5.050 10  sp|Q71RC2|LARP4_HUMAN La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3 (Range: 273-354)
10 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 251-750) 500 NEW_HUMAN_DOMAINS 300-432 -4.890 12  sp|P55268|LAMB2_HUMAN Laminin subunit beta-2 OS=Homo sapiens GN=LAMB2 PE=1 SV=2 (Range: 576-746)
11 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 501-1000) 500 NEW_HUMAN_DOMAINS 314-454 -5.750 12  tr|B4DQ88|B4DQ88_HUMAN Uncharacterized protein OS=Homo sapiens GN=EMR2 PE=2 SV=1 (Range: 1-160)
12 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 751-1153) 403 NEW_HUMAN_DOMAINS 177-372 -6.020 16  sp|Q9NU53|CF072_HUMAN Uncharacterized protein C6orf72 OS=Homo sapiens GN=C6orf72 PE=2 SV=1 (Range: 24-261)
13 gi|15895492|ref|NP_348841.1| chemotaxis protein CheW (CA_C2224) [Clostridium acetobutylicum ATCC 824] (Range: 1-147) 147 NEW_HUMAN_DOMAINS 10-144 -4.940 sp|Q6Q759|SPG17_HUMAN Sperm-associated antigen 17 OS=Homo sapiens GN=SPAG17 PE=1 SV=1 (Range: 1642-1794)
14 gi|15894672|ref|NP_348021.1| phosphoribosylaminoimidazole synthetase (CA_C1393) [Clostridium acetobutylicum ATCC 824] (Range: 1-332) 332 NEW_HUMAN_DOMAINS 71-153 -5.340 18  sp|Q9UHV7|MED13_HUMAN Mediator of RNA polymerase II transcription subunit 13 OS=Homo sapiens GN=MED13 PE=1 SV=3 (Range: 1068-1151)
15 gi|15893880|ref|NP_347229.1| riboflavin synthase subunit alpha (CA_C0591) [Clostridium acetobutylicum ATCC 824] (Range: 1-213) 213 NEW_HUMAN_DOMAINS 6-158 -6.200 13  sp|Q9UH90|FBX40_HUMAN F-box only protein 40 OS=Homo sapiens GN=FBXO40 PE=1 SV=2 (Range: 382-551)
16 gi|15893578|ref|NP_346927.1| hypothetical protein (CA_C0286) [Clostridium acetobutylicum ATCC 824] (Range: 1-244) 244 NEW_HUMAN_DOMAINS 78-97 -4.740 10  sp|Q4KMG0|CDON_HUMAN Cell adhesion molecule-related/down-regulated by oncogenes OS=Homo sapiens GN=CDON PE=1 SV=2 (Range: 1209-1287)
17 gi|15896862|ref|NP_350211.1| oligopeptide ABC transporter, ATPase component (CA_C3628) [Clostridium acetobutylicum ATCC 824] (Range: 1-322) 322 NEW_HUMAN_DOMAINS 123-284 -5.450 tr|A6NMH3|A6NMH3_HUMAN Uncharacterized protein OS=Homo sapiens GN=TNNI3K PE=4 SV=1 (Range: 25-169)
18 gi|15895331|ref|NP_348680.1| segregation and condensation protein A (CA_C2061) [Clostridium acetobutylicum ATCC 824] (Range: 1-249) 249 NEW_HUMAN_DOMAINS 8-80 -5.520 14  tr|Q0PRL4|Q0PRL4_HUMAN Forkhead box P2 variant 3 OS=Homo sapiens GN=FOXP2 PE=2 SV=1 (Range: 252-330)
19 gi|15894096|ref|NP_347445.1| hydrogenase formation factor (hypE) (CA_C0809) [Clostridium acetobutylicum ATCC 824] (Range: 1-335) 335 NEW_HUMAN_DOMAINS 51-98 -5.090 30  sp|Q9NXD2|MTMRA_HUMAN Myotubularin-related protein 10 OS=Homo sapiens GN=MTMR10 PE=1 SV=3 (Range: 709-777)
20 gi|15895945|ref|NP_349294.1| DNA helicase (CA_C2687) [Clostridium acetobutylicum ATCC 824] (Range: 1-714) 714 NEW_HUMAN_DOMAINS 26-561 -4.370 11  sp|O60477|DBC1_HUMAN Deleted in bladder cancer protein 1 OS=Homo sapiens GN=DBC1 PE=2 SV=2 (Range: 179-761)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]