current user: public

anford Burnham Prebys Medical Discovery Institute
Please be advised that due to the planned maintenance our websites might be temporarily unavailable on December 17-18, 2018. We apologise for the inconvenience that this may cause.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4778next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482] 205 PfamA30U 123-192 -6.670 14  PF05283.9; F6ZX51_ORNAN/2-123; Multi-glycosylated core protein 24 (MGC-24), sialomucin
2 gi|29345412|ref|NP_808915.1|(removed signal:1-19) hypothetical protein BT_0002 [Bacteroides thetaiotaomicron VPI-5482] 312 PfamA30U 103-205 -6.660 12  PF14344.4; A9AZA1_HERA2/30-148; Domain of unknown function (DUF4397 topsan)
3 gi|29345413|ref|NP_808916.1| hypothetical protein BT_0003 [Bacteroides thetaiotaomicron VPI-5482] 258 PfamA30U 4-124 -53.000 39  PF14848.4; J9QY98_RIEAN/3-123; DNA-binding domain
132-231 -44.500 39  PF14734.4; B3QWM9_CHLT3/130-225; Domain of unknown function (DUF4469 topsan) with IG-like fold
4 gi|29345414|ref|NP_808917.1| hypothetical protein BT_0004 [Bacteroides thetaiotaomicron VPI-5482] 222 PfamA30U 26-159 -6.790 13  PF08664.8; Q81S68_BACAN/159-299; YcbB domain
5 gi|29345415|ref|NP_808918.1| 30S ribosomal protein S17 BT_0005 [Bacteroides thetaiotaomicron VPI-5482] 178 PfamA30U 108-175 -49.700 47  PF00366.18; M9X2Z9_MANHA/10-77; Ribosomal protein S17
6 gi|29345416|ref|NP_808919.1| hypothetical protein BT_0006 [Bacteroides thetaiotaomicron VPI-5482] 148 PfamA30U 9-106 -7.470 17  PF15444.4; M3W3J1_FELCA/1-214; Transmembrane protein 247
7 gi|29345417|ref|NP_808920.1| hypothetical protein BT_0007 [Bacteroides thetaiotaomicron VPI-5482] 130 PfamA30U 62-102 -7.020 26  PF15183.4; D4A897_RAT/1-89; Melanocortin-2 receptor accessory protein family
8 gi|29345418|ref|NP_808921.1| hypothetical protein BT_0008 [Bacteroides thetaiotaomicron VPI-5482] 181 PfamA30U 24-181 -25.700 16  PF13673.5; R6CQE4_9CLOT/34-160; Acetyltransferase (GNAT) domain
9 gi|29345419|ref|NP_808922.1|(removed signal:1-26) phosphate-binding periplasmic protein precursor, putative ABC transporter BT_0009 [Bacteroides thetaiotaomicron VPI-5482] 343 PfamA30U 16-305 -37.300 15  PF12849.5; B6YQR6_AZOPC/32-299; PBP superfamily domain
10 gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482] 357 PfamA30U 248-355 -6.550 17  PF14878.4; J9E9T8_WUCBA/29-133; Death-like domain of SPT6
11 gi|29345421|ref|NP_808924.1| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482] 282 PfamA30U 201-280 -11.500 23  PF15759.3; G5BQB5_HETGA/102-601; TMEM108 family
12 gi|29345422|ref|NP_808925.1|(removed signal:1-34) hypothetical protein BT_0012 [Bacteroides thetaiotaomicron VPI-5482] 354 PfamA30U 30-176 -7.050 PF03548.13; LOLA_PSEPK/34-197; Outer membrane lipoprotein carrier protein LolA
13 gi|29345423|ref|NP_808926.1| hypothetical protein BT_0013 [Bacteroides thetaiotaomicron VPI-5482] 180 PfamA30U 23-164 -8.190 17  PF08989.8; F2KUP1_PREDF/4-147; Domain of unknown function (DUF1896 topsan)
14 gi|29345424|ref|NP_808927.1| two-component system histidine kinase with response regulator receiver domain BT_0014 [Bacteroides thetaiotaomicron VPI-5482] 807 PfamA30U 327-391 -24.700 30  PF00512.23; Q55783_SYNY3/185-253; His Kinase A (phospho-acceptor) domain
344-535 -14.300 13  PF10090.7; V5SF53_9RHIZ/32-212; Histidine phosphotransferase
438-545 -39.900 43  PF02518.24; O52937_9CYAN/626-739; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
570-680 -27.900 20  PF00072.22; RSSB_ECOLI/10-121; Response regulator receiver domain
15 gi|29345425|ref|NP_808928.1| rteB, two-component system response regulator BT_0015 [Bacteroides thetaiotaomicron VPI-5482] 432 PfamA30U 4-111 -34.600 31  PF00072.22; RSSB_ECOLI/10-121; Response regulator receiver domain
62-350 -13.500 14  PF08298.9; YEAG_ECOLI/19-380; PrkA AAA domain
127-293 -78.000 46  PF00158.24; Q8E8E7_SHEON/154-320; Sigma-54 interaction domain
388-428 -12.700 34  PF02954.17; E4PKW5_MARAH/521-561; Bacterial regulatory protein, Fis family
16 gi|29345426|ref|NP_808929.1| hypothetical protein BT_0016 [Bacteroides thetaiotaomicron VPI-5482] 212 PfamA30U 2-211 -53.800 13  PF09357.8; F4C775_SPHS2/62-280; RteC protein
17 gi|29345427|ref|NP_808930.1| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482] 315 PfamA30U 194-311 -8.110 PF07960.9; CBP4_CANAL/5-137; CBP4
18 gi|29345428|ref|NP_808931.1| hypothetical protein BT_0018 [Bacteroides thetaiotaomicron VPI-5482] 238 PfamA30U 36-127 -5.720 12  PF05189.11; E4X3C8_OIKDI/185-292; RNA 3`-terminal phosphate cyclase (RTC), insert domain
19 gi|29345429|ref|NP_808932.1| hypothetical protein BT_0019 [Bacteroides thetaiotaomicron VPI-5482] 106 PfamA30U 7-56 -7.750 16  PF06857.9; CITD_STRU0/4-85; Malonate decarboxylase delta subunit (MdcD)
20 gi|29345430|ref|NP_808933.1| hypothetical protein BT_0020 [Bacteroides thetaiotaomicron VPI-5482] 152 PfamA30U 1-151 -6.740 10  PF16439.3; R6WPX0_9PORP/21-235; Domain of unknown function (DUF5036 topsan)


FFAS is supported by the NIH grant R01-GM087218-01
1 2 0 2 5 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]