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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4778next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482] 205 JCSG0516 1-205 -41.500 25  GS13804A YP_210478.1 385141 Purified-2008-05-17
2 gi|29345412|ref|NP_808915.1|(removed signal:1-19) hypothetical protein BT_0002 [Bacteroides thetaiotaomicron VPI-5482] 312 JCSG0516 1-312 -125.000 100  GS14092A NP_808915.1 384930 Purified-2008-03-28
3 gi|29345413|ref|NP_808916.1| hypothetical protein BT_0003 [Bacteroides thetaiotaomicron VPI-5482] 258 JCSG0516 1-258 -101.000 54  GS13689A YP_001299448.1 384418 PDB-2012-06-18
4 gi|29345414|ref|NP_808917.1| hypothetical protein BT_0004 [Bacteroides thetaiotaomicron VPI-5482] 222 JCSG0516 27-162 -7.380 13  FN9550A YP_461247.1 379838 Crystal|NMR-2007-10-31
5 gi|29345415|ref|NP_808918.1| 30S ribosomal protein S17 BT_0005 [Bacteroides thetaiotaomicron VPI-5482] 178 JCSG0516 103-177 -58.700 52  TM1491 TM1491 283348 Selected-2001-10-12
6 gi|29345416|ref|NP_808919.1| hypothetical protein BT_0006 [Bacteroides thetaiotaomicron VPI-5482] 148 JCSG0516 1-104 -12.800 17  GS13122A YP_001297399.1 384257 Crystal|NMR-2008-05-02
1-146 -10.500 15  GS13255A NP_811971.1 384964 Purified-2010-09-20
7 gi|29345417|ref|NP_808920.1| hypothetical protein BT_0007 [Bacteroides thetaiotaomicron VPI-5482] 130 JCSG0516 5-77 -8.650 30  SP2635D ZP_04008769.1 413841 Purified-2010-09-29
8 gi|29345418|ref|NP_808921.1| hypothetical protein BT_0008 [Bacteroides thetaiotaomicron VPI-5482] 181 JCSG0516 1-177 -25.000 19  FN2031G NP_988304.1 379585 Purified-2007-10-04
9 gi|29345419|ref|NP_808922.1|(removed signal:1-26) phosphate-binding periplasmic protein precursor, putative ABC transporter BT_0009 [Bacteroides thetaiotaomicron VPI-5482] 343 JCSG0516 6-343 -95.200 18  SP19114B NP_249380.1 413333 Selected-2009-11-12
10 gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482] 357 JCSG0516 231-355 -6.380 14  SP17230A YP_001712982.1 406419 Purified-2010-09-20
11 gi|29345421|ref|NP_808924.1| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482] 282 JCSG0516 124-281 -8.730 15  WS2513B.RBM10 BC024153 421602 PDB-2012-08-27
12 gi|29345422|ref|NP_808925.1|(removed signal:1-34) hypothetical protein BT_0012 [Bacteroides thetaiotaomicron VPI-5482] 354 JCSG0516 1-354 -91.300 100  CM8499A NP_808925.1 368537 Purified-2010-09-29
13 gi|29345423|ref|NP_808926.1| hypothetical protein BT_0013 [Bacteroides thetaiotaomicron VPI-5482] 180 JCSG0516 1-102 -6.840 10  TM1621 TM1621 283478 PDB-2003-02-12
14 gi|29345424|ref|NP_808927.1| two-component system histidine kinase with response regulator receiver domain BT_0014 [Bacteroides thetaiotaomicron VPI-5482] 807 JCSG0516 167-559 -62.300 20  CC20737A NP_421285.1 423155 Purified-2014-07-08
212-807 -61.100 20  SP0400I ZP_03458762.1 407487 Selected-2009-11-12
309-697 -71.800 20  C.LS21380A NP_421956.1 430524 Selected-2011-09-02
15 gi|29345425|ref|NP_808928.1| rteB, two-component system response regulator BT_0015 [Bacteroides thetaiotaomicron VPI-5482] 432 JCSG0516 3-262 -44.400 12  GD14144A YP_796118.1 387985 Crystal|NMR-2008-05-01
72-432 -81.300 17  TM1580 TM1580 283437 Purified-2001-11-20
16 gi|29345426|ref|NP_808929.1| hypothetical protein BT_0016 [Bacteroides thetaiotaomicron VPI-5482] 212 JCSG0516 136-205 -6.980 TM1127 TM1127 282993 Purified-2001-12-12
17 gi|29345427|ref|NP_808930.1| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482] 315 JCSG0516 233-312 -10.500 10  SP17492A NP_390330.1 406727 Purified-2010-09-29
18 gi|29345428|ref|NP_808931.1| hypothetical protein BT_0018 [Bacteroides thetaiotaomicron VPI-5482] 238 JCSG0516 25-238 -6.540 SP18670A ZP_02031592.1 412961 Selected-2009-11-12
19 gi|29345429|ref|NP_808932.1| hypothetical protein BT_0019 [Bacteroides thetaiotaomicron VPI-5482] 106 JCSG0516 1-67 -7.810 10  PU6338A SARO_25NOV03_CONTIG30_REVISED_GENE2773 381800 Crystal|NMR-2009-04-11
20 gi|29345430|ref|NP_808933.1| hypothetical protein BT_0020 [Bacteroides thetaiotaomicron VPI-5482] 152 JCSG0516 6-105 -7.100 10  SP16582E YP_001304103.1 412685 Selected-2009-11-12


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]