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Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482] 205 COG0516 1-102 -6.140 17  [J] COG0198 Ribosomal protein L24
2 gi|29345412|ref|NP_808915.1|(removed signal:1-19) hypothetical protein BT_0002 [Bacteroides thetaiotaomicron VPI-5482] 312 COG0516 12-299 -5.560 13  [O] COG0760 Parvulin-like peptidyl-prolyl isomerase
3 gi|29345413|ref|NP_808916.1| hypothetical protein BT_0003 [Bacteroides thetaiotaomicron VPI-5482] 258 COG0516 31-117 -12.300 12  [L] COG0776 Bacterial nucleoid DNA-binding protein
4 gi|29345414|ref|NP_808917.1| hypothetical protein BT_0004 [Bacteroides thetaiotaomicron VPI-5482] 222 COG0516 1-172 -6.580 11  [U] KOG3284 Vacuolar sorting protein VPS28
5 gi|29345415|ref|NP_808918.1| 30S ribosomal protein S17 BT_0005 [Bacteroides thetaiotaomicron VPI-5482] 178 COG0516 78-177 -57.500 31  [J] KOG1740 Predicted mitochondrial/chloroplast ribosomal protein S17
6 gi|29345416|ref|NP_808919.1| hypothetical protein BT_0006 [Bacteroides thetaiotaomicron VPI-5482] 148 COG0516 4-94 -7.710 16  [P] KOG4404 Tandem pore domain K+ channel TASK3/THIK-1
7 gi|29345417|ref|NP_808920.1| hypothetical protein BT_0007 [Bacteroides thetaiotaomicron VPI-5482] 130 COG0516 45-122 -8.240 28  [K] COG5450 Transcription regulator of the Arc/MetJ class
8 gi|29345418|ref|NP_808921.1| hypothetical protein BT_0008 [Bacteroides thetaiotaomicron VPI-5482] 181 COG0516 8-166 -22.400 10  [R] KOG4144 Arylalkylamine N-acetyltransferase
9 gi|29345419|ref|NP_808922.1|(removed signal:1-26) phosphate-binding periplasmic protein precursor, putative ABC transporter BT_0009 [Bacteroides thetaiotaomicron VPI-5482] 343 COG0516 1-343 -120.000 29  [P] COG0226 ABC-type phosphate transport system, periplasmic component
10 gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482] 357 COG0516 283-356 -5.260 14  [S] COG4471 Uncharacterized protein conserved in bacteria
11 gi|29345421|ref|NP_808924.1| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482] 282 COG0516 132-282 -9.940 14  [S] KOG4351 Uncharacterized conserved protein
12 gi|29345422|ref|NP_808925.1|(removed signal:1-34) hypothetical protein BT_0012 [Bacteroides thetaiotaomicron VPI-5482] 354 COG0516 30-276 -7.740 13  [M] COG5434 Endopolygalacturonase
13 gi|29345423|ref|NP_808926.1| hypothetical protein BT_0013 [Bacteroides thetaiotaomicron VPI-5482] 180 COG0516 7-134 -6.980 12  [O] KOG0425 Ubiquitin-protein ligase
14 gi|29345424|ref|NP_808927.1| two-component system histidine kinase with response regulator receiver domain BT_0014 [Bacteroides thetaiotaomicron VPI-5482] 807 COG0516 1-551 -39.300 16  [T] COG5002 Signal transduction histidine kinase
281-557 -39.600 20  [T] COG0642 Signal transduction histidine kinase
414-802 -22.500 11  [L] COG1389 DNA topoisomerase VI, subunit B
576-788 -27.900 10  [T] COG2198 FOG: HPt domain
15 gi|29345425|ref|NP_808928.1| rteB, two-component system response regulator BT_0015 [Bacteroides thetaiotaomicron VPI-5482] 432 COG0516 2-432 -112.000 35  [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
16 gi|29345426|ref|NP_808929.1| hypothetical protein BT_0016 [Bacteroides thetaiotaomicron VPI-5482] 212 COG0516 135-205 -7.510 26  [NU] COG4966 Tfp pilus assembly protein PilW
17 gi|29345427|ref|NP_808930.1| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482] 315 COG0516 194-312 -7.410 [Z] KOG3756 Pinin (desmosome-associated protein)
18 gi|29345428|ref|NP_808931.1| hypothetical protein BT_0018 [Bacteroides thetaiotaomicron VPI-5482] 238 COG0516 21-124 -6.490 11  [K] COG3561 Phage anti-repressor protein
19 gi|29345429|ref|NP_808932.1| hypothetical protein BT_0019 [Bacteroides thetaiotaomicron VPI-5482] 106 COG0516 1-84 -7.150 16  [C] COG3052 Citrate lyase, gamma subunit
20 gi|29345430|ref|NP_808933.1| hypothetical protein BT_0020 [Bacteroides thetaiotaomicron VPI-5482] 152 COG0516 43-150 -6.940 11  [P] COG2156 K+-transporting ATPase, c chain


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;