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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4678next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] (Range: 1-117) 117 PDB0516 27-113 -29.600 18  3g2b_A mol:protein length:95 Coenzyme PQQ synthesis protein D
2 gi|60680256|ref|YP_210400.1| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343] (Range: 1-74) 74 PDB0516 18-73 -5.790 17  3e1u_A mol:protein length:189 DNA dC
3 gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] (Range: 1-447) 447 PDB0516 1-444 -83.000 23  4mlb_A mol:protein length:492 PF0708
4 gi|60683425|ref|YP_213569.1| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343] (Range: 1-99) 99 PDB0516 1-99 -77.200 55  3j9y_n mol:protein length:102 30S ribosomal protein S14
5 gi|60682385|ref|YP_212529.1| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343] (Range: 1-130) 130 PDB0516 1-130 -93.000 99  3gwy_A mol:protein length:140 Putative CTP pyrophosphohydrolase
6 gi|60680762|ref|YP_210906.1| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] (Range: 1-110) 110 PDB0516 9-77 -8.580 18  4y28_H mol:protein length:90 Photosystem I reaction center subunit VI
7 gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] (Range: 1-415) 415 PDB0516 3-57 -24.400 32  1ovx_A mol:protein length:67 ATP-dependent Clp protease ATP-binding subuni
63-415 -128.000 55  3hte_A mol:protein length:363 ATP-dependent Clp protease ATP-binding subuni
8 gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] (Range: 24-588) 565 PDB0516 4-327 -39.200 11  4i1a_A mol:protein length:391 Response regulator aspartate phosphatase I
19-508 -23.400 3zgq_A mol:protein length:482 INTERFERON-INDUCED PROTEIN WITH TETRATRICOPEP
77-434 -25.600 1hz4_A mol:protein length:373 MALT REGULATORY PROTEIN
9 gi|60681243|ref|YP_211387.1| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] (Range: 1-157) 157 PDB0516 1-31 -8.130 2xtc_A mol:protein length:90 F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X
10 gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] (Range: 1-207) 207 PDB0516 45-198 -7.240 16  2wp7_A mol:protein length:168 PPPDE PEPTIDASE DOMAIN-CONTAINING PROTEIN 2
11 gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range: 1-311) 311 PDB0516 91-311 -73.400 28  4m0h_A mol:protein length:232 Conserved hypothetical protein, putative anti
12 gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] (Range: 1-142) 142 PDB0516 1-138 -83.000 32  1mzg_A mol:protein length:146 SufE Protein
13 gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] (Range: 1-225) 225 PDB0516 1-225 -95.200 30  1ys6_A mol:protein length:233 Transcriptional regulatory protein prrA
14 gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] (Range: 1-388) 388 PDB0516 2-388 -131.000 48  2im5_A mol:protein length:394 Nicotinate phosphoribosyltransferase
15 gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] (Range: 1-245) 245 PDB0516 8-237 -34.900 3cka_A mol:protein length:320 Outer surface protein A
16 gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] (Range: 1-599) 599 PDB0516 2-346 -55.100 21  3eeq_A mol:protein length:336 putative Cobalamin biosynthesis protein G hom
348-598 -63.700 44  4e16_A mol:protein length:253 precorrin-4 C(11)-methyltransferase
17 gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] (Range: 1-299) 299 PDB0516 1-296 -9.720 10  4ui9_J mol:protein length:620 CELL DIVISION CYCLE PROTEIN 16 HOMOLOG
98-299 -33.300 10  1ouv_A mol:protein length:273 conserved hypothetical secreted protein
138-299 -35.700 12  5b26_A mol:protein length:186 Protein sel-1 homolog 1
171-299 -39.100 17  1klx_A mol:protein length:138 Cysteine Rich Protein B
18 gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] (Range: 1-361) 361 PDB0516 313-357 -9.130 15  2co8_A mol:protein length:82 NEDD9 interacting protein with calponin homol
19 gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] (Range: 1-71) 71 PDB0516 4-63 -7.040 26  4f8b_A mol:protein length:165 NADPH-dependent 7-cyano-7-deazaguanine reduct
20 gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] (Range: 1-221) 221 PDB0516 6-218 -86.600 24  2w7z_A mol:protein length:214 PENTAPEPTIDE REPEAT FAMILY PROTEIN


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]