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anford Burnham Prebys Medical Discovery Institute
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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1693next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|11497090|ref|NP_051162.1| hypothetical protein (BB_P01) [Borrelia burgdorferi B31] 407 VFDB 202-403 -5.120 VFG016286(gi:42781039) (nheC) non-hemolytic enterotoxin C [Nhe (VF0533)] [Bacillus cereus ATCC 10987]
2 gi|11497091|ref|NP_051163.1| hypothetical protein (BB_P02) [Borrelia burgdorferi B31] 230 VFDB 64-143 -6.220 VFG001908(gi:15791908) (flaG) flagellar protein FlaG [Flagella (VF0114)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
3 gi|11497092|ref|NP_051164.1| hypothetical protein (BB_P03) [Borrelia burgdorferi B31] 185 VFDB 75-184 -7.010 16  VFG000272(gi:15644700) (ureE) urease accessory protein (ureE) [Urease (VF0050)] [Helicobacter pylori 26695]
4 gi|11497093|ref|NP_051165.1| hypothetical protein (BB_P04) [Borrelia burgdorferi B31] 254 VFDB 1-215 -5.370 12  VFG002159(gi:16803116) (aut) autolysin [Auto (VF0348)] [Listeria monocytogenes EGD-e]
5 gi|11497094|ref|NP_051166.1| hypothetical protein (BB_P05) [Borrelia burgdorferi B31] 190 VFDB 88-152 -4.070 15  VFG007178(gi:28898474) (virG) Type III secretion system chaperone VscW [T3SS1 (VF0408)] [Vibrio parahaemolyticus RIMD 2210633]
6 gi|11497064|ref|NP_051167.1| hypothetical protein (BB_P06) [Borrelia burgdorferi B31] 324 VFDB 63-317 -4.060 12  VFG001999(gi:52841457) (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0157)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
7 gi|11497065|ref|NP_051168.1| hypothetical protein (BB_P07) [Borrelia burgdorferi B31] 153 VFDB 21-129 -5.010 15  VFG000305(gi:15645172) (virB2/cagC) type IV secretion system protein Cag25/CagC, VirB2 homolog [Type IV secretion system (VF0060)] [Helicobacter pylori 26695]
8 gi|11497066|ref|NP_051169.1| hypothetical protein (BB_P08) [Borrelia burgdorferi B31] 133 VFDB 12-129 -5.000 14  VFG018680(gi:28901182) (vopT) type III secretion system effector VopT, ADP-ribosyltransferase [T3SS2 (VF0409)] [Vibrio parahaemolyticus RIMD 2210633]
9 gi|11497067|ref|NP_051170.1| hypothetical protein (BB_P09) [Borrelia burgdorferi B31] 129 VFDB 11-125 -5.560 VFG000462(gi:16764495) (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
10 gi|11497068|ref|NP_051171.1| hypothetical protein (BB_P10) [Borrelia burgdorferi B31] 188 VFDB 2-153 -5.360 15  VFG002035(gi:13508186) (hmw1) cytadherence accessory protein HMW1 [Cytadherence organelle (VF0330)] [Mycoplasma pneumoniae M129]
11 gi|11497095|ref|NP_051172.1| hypothetical protein (BB_P11) [Borrelia burgdorferi B31] 370 VFDB 165-324 -5.620 11  VFG000970(gi:15674770) (mf2) deoxyribonuclease, phage associated [DNase (VF0252)] [Streptococcus pyogenes M1 GAS]
12 gi|11497096|ref|NP_051173.1| hypothetical protein (BB_P12) [Borrelia burgdorferi B31] 142 VFDB 1-120 -5.100 12  VFG041306(gi:52842181) (pieB/lirD) Dot/Icm type IV secretion system effector PieB/LirD [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
13 gi|11497097|ref|NP_051174.1| hypothetical protein (BB_P13) [Borrelia burgdorferi B31] 151 VFDB 22-146 -4.590 14  VFG013487(gi:16273583) (lsgE) glycosyltransferase [LOS (CVF494)] [Haemophilus influenzae Rd KW20]
14 gi|11497098|ref|NP_051175.1| hypothetical protein (BB_P14) [Borrelia burgdorferi B31] 78 VFDB 37-66 -7.340 30  VFG000020(gi:33594647) (ptlI) Ptl Type IV secretion system outer membrane complex protein PtlI [Ptx (VF0026)] [Bordetella pertussis Tohama I]
15 gi|11497099|ref|NP_051176.1| hypothetical protein (BB_P15) [Borrelia burgdorferi B31] 424 VFDB 19-342 -9.060 VFG016254(gi:30021213) (hblA) Hemolysin BL binding component precursor [HBL (VF0532)] [Bacillus cereus ATCC 14579]
16 gi|11497100|ref|NP_051177.1| hypothetical protein (BB_P16) [Borrelia burgdorferi B31] 227 VFDB 23-225 -4.710 10  VFG045598(gi:52843024) (lpg2828) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
17 gi|11497101|ref|NP_051178.1| hypothetical protein (BB_P17) [Borrelia burgdorferi B31] 316 VFDB 35-235 -5.090 12  VFG000420(gi:16082874) (caf1M) putative F1 chaperone protein [F1 antigen (VF0138)] [Yersinia pestis CO92]
18 gi|11497102|ref|NP_051179.1| hypothetical protein (BB_P18) [Borrelia burgdorferi B31] 181 VFDB 61-179 -7.230 10  VFG002484(gi:53722528) (tagC-5) Type VI secretion system protein TssF [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
19 gi|11497069|ref|NP_051180.1| hypothetical protein (BB_P19) [Borrelia burgdorferi B31] 110 VFDB 1-110 -13.100 VFG002477(gi:53722521) (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
20 gi|11497070|ref|NP_051181.1| hypothetical protein (BB_P20) [Borrelia burgdorferi B31] 291 VFDB 79-208 -4.780 15  VFG000014(gi:33594641) (ptxE) pertussis toxin subunit 5 precursor [Ptx (VF0026)] [Bordetella pertussis Tohama I]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.