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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 5436next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|30260196|ref|NP_842573.1| chromosomal replication initiation protein (BA_0001) [Bacillus anthracis str. Ames] 446 NEW_HUMAN_DOMAINS 126-263 -5.760 13  sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)
2 gi|30260197|ref|NP_842574.1| DNA polymerase III subunit beta (BA_0002) [Bacillus anthracis str. Ames] 379 NEW_HUMAN_DOMAINS 88-346 -5.370 11  sp|Q8IX01|SUGP2_HUMAN SURP and G-patch domain-containing protein 2 OS=Homo sapiens GN=SUGP2 PE=1 SV=2 (Range: 297-540)
3 gi|30260198|ref|NP_842575.1| hypothetical protein (BA_0003) [Bacillus anthracis str. Ames] 70 NEW_HUMAN_DOMAINS 5-68 -6.860 20  sp|Q02241|KIF23_HUMAN Kinesin-like protein KIF23 OS=Homo sapiens GN=KIF23 PE=1 SV=3 (Range: 820-895)
4 gi|30260199|ref|NP_842576.1| recombination protein F (BA_0004) [Bacillus anthracis str. Ames] 375 NEW_HUMAN_DOMAINS 287-368 -5.850 14  sp|Q7Z7G8|VP13B_HUMAN Vacuolar protein sorting-associated protein 13B OS=Homo sapiens GN=VPS13B PE=1 SV=2 (Range: 1322-1403)
5 gi|30260200|ref|NP_842577.1| DNA gyrase subunit B (BA_0005) [Bacillus anthracis str. Ames] 640 NEW_HUMAN_DOMAINS 252-393 -7.000 14  sp|Q8N6G2|CM026_HUMAN Uncharacterized protein C13orf26 OS=Homo sapiens GN=C13orf26 PE=2 SV=1 (Range: 105-289)
6 gi|30260201|ref|NP_842578.1| DNA gyrase subunit A (BA_0006) [Bacillus anthracis str. Ames] 823 NEW_HUMAN_DOMAINS 39-167 -5.400 18  sp|Q9H1B7|I2BPL_HUMAN Interferon regulatory factor 2-binding protein-like OS=Homo sapiens GN=IRF2BPL PE=1 SV=1 (Range: 373-516)
7 gi|30260202|ref|NP_842579.1| inosine 5'-monophosphate dehydrogenase (BA_0008) [Bacillus anthracis str. Ames] 487 NEW_HUMAN_DOMAINS 30-189 -4.590 15  sp|Q8N1W0|YF005_HUMAN Transmembrane protein FLJ37396 OS=Homo sapiens PE=2 SV=2 (Range: 371-526)
8 gi|30260203|ref|NP_842580.1|(removed signalp:1-28) D-alanyl-D-alanine carboxypeptidase (BA_0009) [Bacillus anthracis str. Ames] 407 NEW_HUMAN_DOMAINS 92-157 -7.610 17  sp|Q6P988|NOTUM_HUMAN Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2 (Range: 421-496)
9 gi|30260204|ref|NP_842581.1| pyridoxal biosynthesis lyase PdxS (BA_0010) [Bacillus anthracis str. Ames] 295 NEW_HUMAN_DOMAINS 40-92 -6.690 17  sp|Q96AQ9|F131C_HUMAN Protein FAM131C OS=Homo sapiens GN=FAM131C PE=2 SV=2 (Range: 1-119)
10 gi|30260205|ref|NP_842582.1| glutamine amidotransferase subunit PdxT (BA_0011) [Bacillus anthracis str. Ames] 196 NEW_HUMAN_DOMAINS 63-116 -4.610 15  sp|Q8WWL2|SPIR2_HUMAN Protein spire homolog 2 OS=Homo sapiens GN=SPIRE2 PE=1 SV=3 (Range: 627-714)
11 gi|30260206|ref|NP_842583.1| seryl-tRNA synthetase (BA_0012) [Bacillus anthracis str. Ames] 424 NEW_HUMAN_DOMAINS 33-105 -5.590 12  tr|B5MDG7|B5MDG7_HUMAN Uncharacterized protein OS=Homo sapiens GN=HMG20B PE=4 SV=2 (Range: 199-286)
12 gi|30260207|ref|NP_842584.1| hypothetical protein (BA_0013) [Bacillus anthracis str. Ames] 183 NEW_HUMAN_DOMAINS 60-93 -5.990 29  sp|P49792|RBP2_HUMAN E3 SUMO-protein ligase RanBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2 (Range: 860-909)
13 gi|30260208|ref|NP_842585.1| deoxynucleoside kinase family protein (BA_0014) [Bacillus anthracis str. Ames] 222 NEW_HUMAN_DOMAINS 1-36 -6.870 sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3 (Range: 217-335)
14 gi|30260209|ref|NP_842586.1| deoxynucleoside kinase family protein (BA_0015) [Bacillus anthracis str. Ames] 211 NEW_HUMAN_DOMAINS 2-152 -6.090 10  sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)
15 gi|30260210|ref|NP_842587.1| isochorismatase family protein (BA_0016) [Bacillus anthracis str. Ames] 179 NEW_HUMAN_DOMAINS 23-125 -6.480 12  tr|E7EWK8|E7EWK8_HUMAN Uncharacterized protein OS=Homo sapiens GN=PLOD1 PE=4 SV=2 (Range: 19-216)
16 gi|30260211|ref|NP_842588.1|(removed signalp:1-24) hypothetical protein (BA_0017) [Bacillus anthracis str. Ames] 22 NEW_HUMAN_DOMAINS 6-18 -3.870 30  sp|Q8NGG3|OR5T3_HUMAN Olfactory receptor 5T3 OS=Homo sapiens GN=OR5T3 PE=2 SV=3 (Range: 1-55)
17 gi|30260212|ref|NP_842589.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein (BA_0018) [Bacillus anthracis str. Ames] 166 NEW_HUMAN_DOMAINS 80-138 -6.300 12  sp|Q96T75|DSCR8_HUMAN Down syndrome critical region protein 8 OS=Homo sapiens GN=DSCR8 PE=2 SV=2 (Range: 1-97)
18 gi|30260213|ref|NP_842590.1| DNA polymerase III subunits gamma and tau (BA_0019) [Bacillus anthracis str. Ames] 562 NEW_HUMAN_DOMAINS 26-172 -5.360 15  sp|Q68BL8|OLM2B_HUMAN Olfactomedin-like protein 2B OS=Homo sapiens GN=OLFML2B PE=2 SV=2 (Range: 30-179)
19 gi|30260214|ref|NP_842591.1| hypothetical protein (BA_0020) [Bacillus anthracis str. Ames] 109 NEW_HUMAN_DOMAINS 14-109 -5.440 13  sp|Q8N3G9|TM130_HUMAN Transmembrane protein 130 OS=Homo sapiens GN=TMEM130 PE=2 SV=1 (Range: 32-176)
20 gi|30260215|ref|NP_842592.1| recombination protein RecR (BA_0021) [Bacillus anthracis str. Ames] 198 NEW_HUMAN_DOMAINS 4-183 -5.600 12  sp|Q8IZY2|ABCA7_HUMAN ATP-binding cassette sub-family A member 7 OS=Homo sapiens GN=ABCA7 PE=1 SV=3 (Range: 1261-1427)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]