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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 3034next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 CAJ09955.1 ATP/GTP-binding site motif A (P-loop):Bacterial chromosomal replication initiator protein, DnaA:AAA ATPase:Neutral zinc metal [Brucella abortus 2308] 496 PDB0516 11-495 -112.000 30  2z4r_A mol:protein length:440 Chromosomal replication initiator protein dna
2 CAJ09958.1 DNA polymerase III, beta chain:Inorganic pyrophosphatase [Brucella abortus 2308] 397 PDB0516 21-397 -107.000 40  4tr8_A mol:protein length:383 DNA polymerase III subunit beta
3 CAJ09959.1 RecF protein:ATP/GTP-binding site motif A (P-loop):Aldehyde dehydrogenase:SMC protein, N-terminal:AAA ATPase [Brucella abortus 2308] 384 PDB0516 12-383 -95.300 26  2o5v_A mol:protein length:359 DNA replication and repair protein recF
4 CAJ09960.1 NAD binding site:UBA/THIF-type NAD/FAD binding fold:Aromatic-ring hydroxylase [Brucella abortus 2308] 260 PDB0516 10-257 -109.000 44  1jw9_B mol:protein length:249 MOLYBDOPTERIN BIOSYNTHESIS MOEB PROTEIN
5 CAJ09961.1 Pyridine nucleotide-disulphide oxidoreductase, class I:D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain [Brucella abortus 2308] 318 PDB0516 2-318 -114.000 34  4xa8_A mol:protein length:320 D-isomer specific 2-hydroxyacid dehydrogenase
6 CAJ09962.1 ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase [Brucella abortus 2308] 541 PDB0516 3-264 -81.900 37  4fwi_B mol:protein length:334 ABC-type dipeptide/oligopeptide/nickel transp
9-506 -54.800 16  3ozx_A mol:protein length:538 RNase L inhibitor
25-541 -30.600 19  3wme_A mol:protein length:612 ATP-binding cassette, sub-family B, member 1
7 CAJ09963.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 379 PDB0516 165-375 -17.900 17  3dhw_A mol:protein length:217 D-methionine transport system permease protei
8 CAJ09964.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 365 PDB0516 121-357 -12.600 17  3dhw_A mol:protein length:217 D-methionine transport system permease protei
9 CAJ09965.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 604 PDB0516 3-604 -158.000 32  5icq_A mol:protein length:610 Methylocystis parvus OBBP MbnE
10 CAJ09966.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 622 PDB0516 23-612 -167.000 39  4ony_A mol:protein length:595 Extracellular solute-binding protein family 5
11 CAJ09967.1 conserved hypothetical protein [Brucella abortus 2308] 107 PDB0516 7-98 -6.580 13  3iu0_A mol:protein length:382 Protein-glutamine gamma-glutamyltransferase
12 CAJ09968.1 conserved hypothetical protein [Brucella abortus 2308] 66 PDB0516 5-64 -6.940 18  3hyk_A mol:protein length:122 Holo-[acyl-carrier-protein] synthase
13 CAJ09969.1 conserved hypothetical protein [Brucella abortus 2308] 116 PDB0516 7-46 -7.660 15  4qq4_A mol:protein length:62 MORC family CW-type zinc finger protein 3
14 CAJ09971.1 conserved domain protein [Brucella abortus 2308] 66 PDB0516 7-59 -7.150 13  2r5x_A mol:protein length:129 Uncharacterized conserved protein
15 CAJ09972.1 Enoyl-CoA hydratase/isomerase [Brucella abortus 2308] 264 PDB0516 3-263 -104.000 33  3i47_A mol:protein length:268 Enoyl CoA hydratase/isomerase (Crotonase)
16 CAJ09973.1 HMG-CoA lyase-like [Brucella abortus 2308] 287 PDB0516 1-287 -131.000 99  1ydn_A mol:protein length:295 HYDROXYMETHYLGLUTARYL-COA LYASE
17 CAJ09974.1 Biotin/lipoyl attachment:Biotin-requiring enzyme, attachment site:Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl [Brucella abortus 2308] 673 PDB0516 14-673 -149.000 50  3u9s_A mol:protein length:655 Methylcrotonyl-CoA carboxylase, alpha-subunit
18 CAJ09975.1 Carboxyl transferase family [Brucella abortus 2308] 535 PDB0516 1-535 -187.000 70  3u9r_B mol:protein length:555 Methylcrotonyl-CoA carboxylase, beta-subunit
19 CAJ09978.1 unnamed protein product [Brucella abortus 2308] 127 PDB0516 1-33 -11.700 27  4d5y_j mol:protein length:97 60S RIBOSOMAL PROTEIN EL37
9-68 -11.600 2gqj_A mol:protein length:98 Zinc finger protein KIAA1196
20 CAJ09979.1 ATP/GTP-binding site motif A (P-loop):EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase):3-phosphoshikimate 1-carbo [Brucella abortus 2308] 450 PDB0516 1-450 -149.000 80  2gg4_A mol:protein length:455 3-phosphoshikimate 1-carboxyvinyltransferase


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.