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anford Burnham Prebys Medical Discovery Institute
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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 3034next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 CAJ09955.1 ATP/GTP-binding site motif A (P-loop):Bacterial chromosomal replication initiator protein, DnaA:AAA ATPase:Neutral zinc metal [Brucella abortus 2308] 496 NEW_HUMAN_DOMAINS 190-305 -4.940 14  sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)
2 CAJ09958.1 DNA polymerase III, beta chain:Inorganic pyrophosphatase [Brucella abortus 2308] 397 NEW_HUMAN_DOMAINS 234-354 -6.290 18  tr|Q5T191|Q5T191_HUMAN FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae) OS=Homo sapiens GN=FLAD1 PE=2 SV=1 (Range: 1-138)
3 CAJ09959.1 RecF protein:ATP/GTP-binding site motif A (P-loop):Aldehyde dehydrogenase:SMC protein, N-terminal:AAA ATPase [Brucella abortus 2308] 384 NEW_HUMAN_DOMAINS 5-53 -7.790 sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3 (Range: 217-335)
4 CAJ09960.1 NAD binding site:UBA/THIF-type NAD/FAD binding fold:Aromatic-ring hydroxylase [Brucella abortus 2308] 260 NEW_HUMAN_DOMAINS 25-135 -5.530 15  sp|Q9NSA0|S22AB_HUMAN Solute carrier family 22 member 11 OS=Homo sapiens GN=SLC22A11 PE=1 SV=1 (Range: 1-137)
5 CAJ09961.1 Pyridine nucleotide-disulphide oxidoreductase, class I:D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain [Brucella abortus 2308] 318 NEW_HUMAN_DOMAINS 168-229 -5.900 16  sp|Q5HYC2|K2026_HUMAN Uncharacterized protein KIAA2026 OS=Homo sapiens GN=KIAA2026 PE=2 SV=2 (Range: 1809-1944)
6 CAJ09962.1 ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase [Brucella abortus 2308] 541 NEW_HUMAN_DOMAINS 435-522 -6.480 12  tr|B8ZZL5|B8ZZL5_HUMAN Uncharacterized protein OS=Homo sapiens GN=MITD1 PE=4 SV=1 (Range: 106-197)
7 CAJ09963.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 379 NEW_HUMAN_DOMAINS 165-354 -6.740 14  sp|Q5JYT7|K1755_HUMAN Uncharacterized protein KIAA1755 OS=Homo sapiens GN=KIAA1755 PE=2 SV=2 (Range: 1-192)
8 CAJ09964.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 365 NEW_HUMAN_DOMAINS 226-286 -6.440 16  sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2 (Range: 1658-1719)
9 CAJ09965.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 604 NEW_HUMAN_DOMAINS 176-345 -3.890 12  tr|Q5T5D6|Q5T5D6_HUMAN Chromosome 1 open reading frame 88 OS=Homo sapiens GN=C1orf88 PE=2 SV=1 (Range: 1-158)
10 CAJ09966.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 622 NEW_HUMAN_DOMAINS 104-222 -4.180 10  sp|O43593|HAIR_HUMAN Protein hairless OS=Homo sapiens GN=HR PE=1 SV=5 (Range: 837-958)
11 CAJ09967.1 conserved hypothetical protein [Brucella abortus 2308] 107 NEW_HUMAN_DOMAINS 15-102 -6.960 20  sp|Q71F56|MD13L_HUMAN Mediator of RNA polymerase II transcription subunit 13-like OS=Homo sapiens GN=MED13L PE=1 SV=1 (Range: 1105-1189)
12 CAJ09968.1 conserved hypothetical protein [Brucella abortus 2308] 66 NEW_HUMAN_DOMAINS 8-66 -5.900 16  sp|Q9C0B9|ZCHC2_HUMAN Zinc finger CCHC domain-containing protein 2 OS=Homo sapiens GN=ZCCHC2 PE=1 SV=6 (Range: 94-205)
13 CAJ09969.1 conserved hypothetical protein [Brucella abortus 2308] 116 NEW_HUMAN_DOMAINS 5-47 -7.570 16  sp|Q8IU99|CAHM1_HUMAN Calcium homeostasis modulator protein 1 OS=Homo sapiens GN=CALHM1 PE=1 SV=2 (Range: 71-142)
14 CAJ09971.1 conserved domain protein [Brucella abortus 2308] 66 NEW_HUMAN_DOMAINS 29-66 -5.800 23  sp|Q96JA1|LRIG1_HUMAN Leucine-rich repeats and immunoglobulin-like domains protein 1 OS=Homo sapiens GN=LRIG1 PE=1 SV=2 (Range: 864-946)
15 CAJ09972.1 Enoyl-CoA hydratase/isomerase [Brucella abortus 2308] 264 NEW_HUMAN_DOMAINS 144-216 -4.650 17  sp|Q6ZQQ6|WDR87_HUMAN WD repeat-containing protein 87 OS=Homo sapiens GN=WDR87 PE=2 SV=3 (Range: 2619-2702)
16 CAJ09973.1 HMG-CoA lyase-like [Brucella abortus 2308] 287 NEW_HUMAN_DOMAINS 59-142 -5.660 12  sp|Q5JSJ4|DX26B_HUMAN Protein DDX26B OS=Homo sapiens GN=DDX26B PE=2 SV=1 (Range: 780-861)
17 CAJ09974.1 Biotin/lipoyl attachment:Biotin-requiring enzyme, attachment site:Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl [Brucella abortus 2308] 673 NEW_HUMAN_DOMAINS 139-214 -4.760 17  sp|Q5JVL4|EFHC1_HUMAN EF-hand domain-containing protein 1 OS=Homo sapiens GN=EFHC1 PE=1 SV=1 (Range: 1-82)
18 CAJ09975.1 Carboxyl transferase family [Brucella abortus 2308] 535 NEW_HUMAN_DOMAINS 291-376 -5.950 12  tr|E9PJK8|E9PJK8_HUMAN Uncharacterized protein OS=Homo sapiens GN=SWAP70 PE=4 SV=1 (Range: 62-149)
19 CAJ09978.1 unnamed protein product [Brucella abortus 2308] 127 NEW_HUMAN_DOMAINS 8-36 -11.000 24  sp|Q12766|HMGX3_HUMAN HMG domain-containing protein 3 OS=Homo sapiens GN=HMGXB3 PE=2 SV=2 (Range: 839-896)
20 CAJ09979.1 ATP/GTP-binding site motif A (P-loop):EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase):3-phosphoshikimate 1-carbo [Brucella abortus 2308] 450 NEW_HUMAN_DOMAINS 89-126 -4.470 23  sp|Q96I76|GPTC3_HUMAN G patch domain-containing protein 3 OS=Homo sapiens GN=GPATCH3 PE=2 SV=1 (Range: 177-247)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.