current user: public

anford Burnham Prebys Medical Discovery Institute
Please be advised that due to the planned maintenance our websites might be temporarily unavailable on December 17-18, 2018. We apologise for the inconvenience that this may cause.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 3034next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 CAJ09955.1 ATP/GTP-binding site motif A (P-loop):Bacterial chromosomal replication initiator protein, DnaA:AAA ATPase:Neutral zinc metal [Brucella abortus 2308] 496 COG0516 7-492 -120.000 31  [L] COG0593 ATPase involved in DNA replication initiation
H.sapiens 113-458 -10.100 13  sp|O75351|VPS4B_HUMAN Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2
167-495 -11.800 14  sp|Q99741|CDC6_HUMAN Cell division control protein 6 homolog OS=Homo sapiens GN=CDC6 PE=1 SV=1
HGM_OVER 384-472 -3.120 13  PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;
JCSG0516 6-492 -124.000 36  C.LS21333A NP_418828.1 430427 Purified-2014-07-08
NEW_HUMAN_DOMAINS 190-305 -4.940 14  sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)
PDB0516 11-495 -112.000 30  2z4r_A mol:protein length:440 Chromosomal replication initiator protein dna
PfamA30U 9-72 -17.300 20  PF11638.6; DNAA_LAWIP/5-67; DnaA N-terminal domain
152-376 -91.300 42  PF00308.16; DNAA_STRCO/317-535; Bacterial dnaA protein
402-470 -39.200 62  PF08299.9; D9QS97_ACEAZ/358-426; Bacterial dnaA protein helix-turn-helix
SCOP206 150-371 -85.400 33  d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
387-494 -48.600 33  d1l8qa1 a.4.12.2 (A:290-399) Chromosomal replication initiation factor DnaA C-terminal domain IV {Aquifex aeolicus [TaxId: 63363]}
VFDB 122-411 -7.680 14  VFG022019(gi:15607423) (eccA3) Type VII secretion system protein EccA3 [ESX-3 (VF0521)] [Mycobacterium tuberculosis H37Rv]
2 CAJ09958.1 DNA polymerase III, beta chain:Inorganic pyrophosphatase [Brucella abortus 2308] 397 COG0516 26-397 -101.000 30  [L] COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)
H.sapiens 91-366 -8.130 12  sp|O60671|RAD1_HUMAN Cell cycle checkpoint protein RAD1 OS=Homo sapiens GN=RAD1 PE=1 SV=1
HGM_OVER 26-345 -3.870 PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;
JCSG0516 26-397 -97.500 26  TM0262 TM0262 282139 PDB-2004-11-09
NEW_HUMAN_DOMAINS 234-354 -6.290 18  tr|Q5T191|Q5T191_HUMAN FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae) OS=Homo sapiens GN=FLAD1 PE=2 SV=1 (Range: 1-138)
PDB0516 21-397 -107.000 40  4tr8_A mol:protein length:383 DNA polymerase III subunit beta
PfamA30U 26-146 -60.000 53  PF00712.17; DPO3B_CAUCR/1-121; DNA polymerase III beta subunit, N-terminal domain
155-274 -59.100 44  PF02767.14; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain
276-396 -41.000 28  PF02768.13; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
SCOP206 26-147 -53.800 43  d4k3la1 d.131.1.1 (A:1-122) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
149-275 -59.400 41  d4k3la2 d.131.1.1 (A:123-244) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
276-396 -59.200 33  d4k3la3 d.131.1.1 (A:245-365) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
VFDB 199-372 -4.180 VFG000004(gi:33592658) (fim3) serotype 3 fimbrial subunit precursor [Fimbriae (VF0031)] [Bordetella pertussis Tohama I]
3 CAJ09959.1 RecF protein:ATP/GTP-binding site motif A (P-loop):Aldehyde dehydrogenase:SMC protein, N-terminal:AAA ATPase [Brucella abortus 2308] 384 COG0516 14-383 -100.000 25  [L] COG1195 Recombinational DNA repair ATPase (RecF pathway)
H.sapiens 14-266 -21.000 10  sp|Q92878|RAD50_HUMAN DNA repair protein RAD50 OS=Homo sapiens GN=RAD50 PE=1 SV=1 (Range: 1-300)
15-306 -18.700 12  sp|Q14683|SMC1A_HUMAN Structural maintenance of chromosomes protein 1A OS=Homo sapiens GN=SMC1A PE=1 SV=2 (Range: 1-300)
152-384 -12.400 17  sp|Q9UQE7|SMC3_HUMAN Structural maintenance of chromosomes protein 3 OS=Homo sapiens GN=SMC3 PE=1 SV=2 (Range: 901-1200)
HGM_OVER 12-151 -2.300 PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)
JCSG0516 14-380 -29.200 17  NT12358C DHAF_12NOV03_CONTIG1086_REVISED_GENE3509 378730 Purified-2008-01-24
NEW_HUMAN_DOMAINS 5-53 -7.790 sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3 (Range: 217-335)
PDB0516 12-383 -95.300 26  2o5v_A mol:protein length:359 DNA replication and repair protein recF
PfamA30U 14-364 -30.700 14  PF13175.4; I1YS32_PREI7/1-378; AAA ATPase domain
SCOP206 14-384 -33.800 21  g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Pyrococcus furiosus [TaxId: 2261]}
VFDB 16-360 -11.900 17  VFG037118(gi:15676638) (recN) DNA repair protein RecN [RecN (VF0457)] [Neisseria meningitidis MC58]
4 CAJ09960.1 NAD binding site:UBA/THIF-type NAD/FAD binding fold:Aromatic-ring hydroxylase [Brucella abortus 2308] 260 COG0516 2-260 -102.000 43  [H] KOG2017 Molybdopterin synthase sulfurylase
H.sapiens 2-260 -102.000 45  sp|O95396|MOCS3_HUMAN Adenylyltransferase and sulfurtransferase MOCS3 OS=Homo sapiens GN=MOCS3 PE=1 SV=1
HGM_OVER 32-242 -5.690 13  PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
JCSG0516 19-204 -35.000 26  KN.B21272A.UBA3 BC022853 429644 Selected-2013-03-25
NEW_HUMAN_DOMAINS 25-135 -5.530 15  sp|Q9NSA0|S22AB_HUMAN Solute carrier family 22 member 11 OS=Homo sapiens GN=SLC22A11 PE=1 SV=1 (Range: 1-137)
PDB0516 10-257 -109.000 44  1jw9_B mol:protein length:249 MOLYBDOPTERIN BIOSYNTHESIS MOEB PROTEIN
PfamA30U 34-204 -38.600 25  PF00899.19; SAE2_HUMAN/11-443; ThiF family
SCOP206 10-257 -109.000 44  d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}
VFDB 4-258 -26.100 11  VFG045336(gi:588561369) (llsY) LlsY [LLS (VF0410)] [Listeria innocua SLCC6294]
5 CAJ09961.1 Pyridine nucleotide-disulphide oxidoreductase, class I:D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain [Brucella abortus 2308] 318 COG0516 22-309 -37.600 22  [C] KOG0069 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily)
53-313 -42.600 20  [K] KOG0067 Transcription factor CtBP
H.sapiens 61-313 -44.400 27  sp|Q9UBQ7|GRHPR_HUMAN Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens GN=GRHPR PE=1 SV=1
HGM_OVER 175-283 -4.100 12  PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
JCSG0516 46-315 -44.100 23  TM0327 TM0327 282202 Purified-2001-03-14
NEW_HUMAN_DOMAINS 168-229 -5.900 16  sp|Q5HYC2|K2026_HUMAN Uncharacterized protein KIAA2026 OS=Homo sapiens GN=KIAA2026 PE=2 SV=2 (Range: 1809-1944)
PDB0516 2-318 -114.000 34  4xa8_A mol:protein length:320 D-isomer specific 2-hydroxyacid dehydrogenase
PfamA30U 51-313 -44.300 23  PF00389.28; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
107-283 -44.700 27  PF02826.17; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
SCOP206 42-160 -16.900 25  d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Pyrobaculum aerophilum [TaxId: 13773]}
96-284 -52.300 24  d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Pyrobaculum aerophilum [TaxId: 13773]}
VFDB 61-307 -5.800 13  VFG000360(gi:16122156) (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
6 CAJ09962.1 ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase [Brucella abortus 2308] 541 COG0516 2-539 -156.000 56  [R] COG4172 ABC-type uncharacterized transport system, duplicated ATPase component
H.sapiens 6-506 -53.200 16  sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E member 1 OS=Homo sapiens GN=ABCE1 PE=1 SV=1
273-541 -28.300 19  sp|Q8NE71|ABCF1_HUMAN ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1 PE=1 SV=2 (Range: 301-600)
HGM_OVER 2-78 -4.680 HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;
JCSG0516 5-527 -114.000 23  NT0027AA NP_987740.1 378503 Purified-2007-10-10
NEW_HUMAN_DOMAINS 435-522 -6.480 12  tr|B8ZZL5|B8ZZL5_HUMAN Uncharacterized protein OS=Homo sapiens GN=MITD1 PE=4 SV=1 (Range: 106-197)
PDB0516 3-264 -81.900 37  4fwi_B mol:protein length:334 ABC-type dipeptide/oligopeptide/nickel transp
9-506 -54.800 16  3ozx_A mol:protein length:538 RNase L inhibitor
25-541 -30.600 19  3wme_A mol:protein length:612 ATP-binding cassette, sub-family B, member 1
PfamA30U 30-475 -11.800 PF10443.7; C8VEZ9_EMENI/373-791; RNA12 protein
236-280 -14.700 24  PF08352.10; Q8TTX6_METAC/231-290; Oligopeptide/dipeptide transporter, C-terminal region
302-454 -29.100 29  PF00005.25; YTFR_ECOLI/25-174; ABC transporter
310-489 -13.200 16  PF13401.4; B2UJB3_RALPJ/42-210; AAA domain
SCOP206 3-237 -46.000 31  d2pcja_ c.37.1.0 (A:) automated matches {Aquifex aeolicus [TaxId: 224324]}
275-525 -58.300 28  d3tuic1 c.37.1.12 (C:1-240) automated matches {Escherichia coli K-12 [TaxId: 83333]}
VFDB 7-525 -48.000 23  VFG012509(gi:26247127) (iroC) ATP binding cassette transporter [Salmochelin (IA013)] [Escherichia coli CFT073]
7 CAJ09963.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 379 COG0516 15-378 -98.300 59  [R] COG4239 ABC-type uncharacterized transport system, permease component
H.sapiens 178-364 -8.180 14  sp|P55064|AQP5_HUMAN(removed signalp:1-32) Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1
HGM_OVER 170-271 -4.210 17  PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
JCSG0516 11-377 -86.200 28  TM0059 TM0059 281940 Purified-2001-08-24
NEW_HUMAN_DOMAINS 165-354 -6.740 14  sp|Q5JYT7|K1755_HUMAN Uncharacterized protein KIAA1755 OS=Homo sapiens GN=KIAA1755 PE=2 SV=2 (Range: 1-192)
PDB0516 165-375 -17.900 17  3dhw_A mol:protein length:217 D-methionine transport system permease protei
PfamA30U 20-72 -14.600 18  PF12911.5; F2G428_ALTMD/14-66; N-terminal TM domain of oligopeptide transport permease C
191-363 -12.000 20  PF00528.20; YHDY_ECOLI/173-362; Binding-protein-dependent transport system inner membrane component
SCOP206 165-373 -17.500 17  d3tuia_ f.58.1.1 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}
VFDB 180-369 -8.100 VFG000249(gi:15677998) (fbpB) iron(III) ABC transporter, permease protein [FbpABC (VF0272)] [Neisseria meningitidis MC58]
8 CAJ09964.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 365 COG0516 1-364 -130.000 61  [R] COG4174 ABC-type uncharacterized transport system, permease component
H.sapiens 172-325 -7.780 10  sp|Q7Z7M1|GP144_HUMAN Probable G-protein coupled receptor 144 OS=Homo sapiens GN=GPR144 PE=2 SV=1 (Range: 751-963)
HGM_OVER 4-117 -4.140 16  HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;
JCSG0516 1-361 -109.000 34  TM0532 TM0532 282405 Purified-2001-10-10
NEW_HUMAN_DOMAINS 226-286 -6.440 16  sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2 (Range: 1658-1719)
PDB0516 121-357 -12.600 17  3dhw_A mol:protein length:217 D-methionine transport system permease protei
PfamA30U 150-359 -7.580 16  PF00528.20; YHDY_ECOLI/173-362; Binding-protein-dependent transport system inner membrane component
SCOP206 121-355 -11.900 17  d3tuia_ f.58.1.1 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}
VFDB 128-346 -7.280 13  VFG000249(gi:15677998) (fbpB) iron(III) ABC transporter, permease protein [FbpABC (VF0272)] [Neisseria meningitidis MC58]
9 CAJ09965.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 604 COG0516 75-578 -41.900 18  [E] COG0747 ABC-type dipeptide transport system, periplasmic component
H.sapiens 86-423 -6.310 14  sp|Q9NZV5|SELN_HUMAN Selenoprotein N OS=Homo sapiens GN=SEPN1 PE=1 SV=5
HGM_OVER 104-189 -2.450 PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;
JCSG0516 1-604 -53.000 14  TM1199 TM1199 283064 Crystal|NMR-2005-01-23
42-604 -75.700 16  TM0071 TM0071 281952 Purified-2004-11-16
NEW_HUMAN_DOMAINS 176-345 -3.890 12  tr|Q5T5D6|Q5T5D6_HUMAN Chromosome 1 open reading frame 88 OS=Homo sapiens GN=C1orf88 PE=2 SV=1 (Range: 1-158)
PDB0516 3-604 -158.000 32  5icq_A mol:protein length:610 Methylocystis parvus OBBP MbnE
PfamA30U 112-519 -33.600 19  PF00496.20; Q882P9_PSESM/71-433; Bacterial extracellular solute-binding proteins, family 5 Middle
SCOP206 51-603 -44.600 18  d1xoca1 c.94.1.1 (A:17-520) Oligo-peptide binding protein (OPPA) {Bacillus subtilis [TaxId: 1423]}
75-593 -50.100 18  d1vr5a1 c.94.1.1 (A:23-557) Oligo-peptide binding protein (OPPA) {Thermotoga maritima [TaxId: 2336]}
VFDB 21-559 -5.350 VFG001291(gi:21284341) (cna) collagen adhesin precursor [CNA (VF0005)] [Staphylococcus aureus subsp. aureus MW2]
10 CAJ09966.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 622 COG0516 26-612 -24.800 13  [R] COG4533 ABC-type uncharacterized transport system, periplasmic component
55-585 -44.500 20  [E] COG0747 ABC-type dipeptide transport system, periplasmic component
H.sapiens 214-483 -6.080 14  sp|Q9NXL9|MCM9_HUMAN DNA replication licensing factor MCM9 OS=Homo sapiens GN=MCM9 PE=1 SV=3 (Range: 151-450)
HGM_OVER 105-189 -3.120 PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;
JCSG0516 1-622 -82.100 17  TM0071 TM0071 281952 Purified-2004-11-16
NEW_HUMAN_DOMAINS 104-222 -4.180 10  sp|O43593|HAIR_HUMAN Protein hairless OS=Homo sapiens GN=HR PE=1 SV=5 (Range: 837-958)
PDB0516 23-612 -167.000 39  4ony_A mol:protein length:595 Extracellular solute-binding protein family 5
PfamA30U 113-526 -34.600 17  PF00496.20; Q882P9_PSESM/71-433; Bacterial extracellular solute-binding proteins, family 5 Middle
114-567 -9.660 11  PF17374; Q8EV07.1/37-965; Family of unknown function (DUF5396 topsan)
SCOP206 58-622 -52.400 18  d1vr5a1 c.94.1.1 (A:23-557) Oligo-peptide binding protein (OPPA) {Thermotoga maritima [TaxId: 2336]}
VFDB 26-562 -5.240 VFG002481(gi:53722525) (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
11 CAJ09967.1 conserved hypothetical protein [Brucella abortus 2308] 107 COG0516 14-107 -5.960 16  [M] COG2222 Predicted phosphosugar isomerases
H.sapiens 13-105 -7.660 18  sp|Q9UP38|FZD1_HUMAN Frizzled-1 OS=Homo sapiens GN=FZD1 PE=1 SV=2 (Range: 451-647)
HGM_OVER 14-98 -3.190 11  PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;
JCSG0516 5-73 -6.400 27  GE8810CY YP_264758.1 396778 Selected-2008-07-09
NEW_HUMAN_DOMAINS 15-102 -6.960 20  sp|Q71F56|MD13L_HUMAN Mediator of RNA polymerase II transcription subunit 13-like OS=Homo sapiens GN=MED13L PE=1 SV=1 (Range: 1105-1189)
PDB0516 7-98 -6.580 13  3iu0_A mol:protein length:382 Protein-glutamine gamma-glutamyltransferase
PfamA30U 13-73 -6.370 26  PF02082.18; Q817Y2_BACCR/1-83; Transcriptional regulator
SCOP206 11-101 -7.370 19  d4g8ta1 d.54.1.0 (A:2-133) automated matches {Actinobacillus succinogenes [TaxId: 339671]}
VFDB 5-100 -5.020 12  VFG012812(gi:31983551) (ospF) type III secretion system effector OspF, phosphothreonine lyase [T3SS (SS011)] [Shigella flexneri 2a str. 301]
12 CAJ09968.1 conserved hypothetical protein [Brucella abortus 2308] 66 COG0516 7-66 -8.320 16  [S] COG3801 Uncharacterized protein conserved in bacteria
H.sapiens 9-36 -7.350 25  sp|Q8WWK9|CKAP2_HUMAN Cytoskeleton-associated protein 2 OS=Homo sapiens GN=CKAP2 PE=1 SV=1 (Range: 151-450)
HGM_OVER 1-66 -5.180 19  PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;
JCSG0516 2-66 -5.780 12  WS.A20872A.REV ABI79892 429842 Crystal|NMR-2012-10-15
NEW_HUMAN_DOMAINS 8-66 -5.900 16  sp|Q9C0B9|ZCHC2_HUMAN Zinc finger CCHC domain-containing protein 2 OS=Homo sapiens GN=ZCCHC2 PE=1 SV=6 (Range: 94-205)
PDB0516 5-64 -6.940 18  3hyk_A mol:protein length:122 Holo-[acyl-carrier-protein] synthase
PfamA30U 2-36 -5.970 22  PF12550.6; J6ED67_SACK1/277-355; Transcriptional activator of glycolytic enzymes
SCOP206 10-66 -5.640 19  d4mu3a2 d.14.1.9 (A:96-194) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
VFDB 9-66 -5.300 12  VFG001437(gi:4836791) (cseA) CS22 adhesin protein [Adhesive fimbriae (VF0213)] [Escherichia coli str. ARG-3]
13 CAJ09969.1 conserved hypothetical protein [Brucella abortus 2308] 116 COG0516 65-109 -6.430 20  [R] COG1745 Predicted metal-binding protein
H.sapiens 44-111 -7.430 17  sp|Q5VYP0|F75A3_HUMAN Protein FAM75A3 OS=Homo sapiens GN=FAM75A3 PE=2 SV=1 (Range: 1-300)
HGM_OVER 38-114 -3.590 18  PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]
JCSG0516 4-113 -6.290 17  FB9776B YP_831618.1 375017 Crystal|NMR-2010-01-28
NEW_HUMAN_DOMAINS 5-47 -7.570 16  sp|Q8IU99|CAHM1_HUMAN Calcium homeostasis modulator protein 1 OS=Homo sapiens GN=CALHM1 PE=1 SV=2 (Range: 71-142)
PDB0516 7-46 -7.660 15  4qq4_A mol:protein length:62 MORC family CW-type zinc finger protein 3
PfamA30U 5-106 -6.700 13  PF07267.9; Q2NNY4_NPVHC/1-628; Nucleopolyhedrovirus capsid protein P87
SCOP206 6-96 -6.380 14  d1w9sa_ b.18.1.10 (A:) Hypothetical protein BH0236 {Bacillus halodurans [TaxId: 86665]}
VFDB 51-109 -4.410 12  VFG007178(gi:28898474) (virG) Type III secretion system chaperone VscW [T3SS1 (VF0408)] [Vibrio parahaemolyticus RIMD 2210633]
14 CAJ09971.1 conserved domain protein [Brucella abortus 2308] 66 COG0516 5-64 -5.560 25  [F] COG0737 5`-nucleotidase/2`,3`-cyclic phosphodiesterase and related esterases
H.sapiens 20-66 -8.020 14  sp|Q9Y233|PDE10_HUMAN cAMP and cAMP-inhibited cGMP 3`,5`-cyclic phosphodiesterase 10A OS=Homo sapiens GN=PDE10A PE=1 SV=1 (Range: 301-600)
HGM_OVER 12-48 -2.960 22  PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;
JCSG0516 1-64 -5.770 23  MI9663A YP_461098.1 399109 PDB-2011-05-23
NEW_HUMAN_DOMAINS 29-66 -5.800 23  sp|Q96JA1|LRIG1_HUMAN Leucine-rich repeats and immunoglobulin-like domains protein 1 OS=Homo sapiens GN=LRIG1 PE=1 SV=2 (Range: 864-946)
PDB0516 7-59 -7.150 13  2r5x_A mol:protein length:129 Uncharacterized conserved protein
PfamA30U 7-59 -6.780 19  PF08868.8; B7GEU3_ANOFW/15-144; YugN-like family
SCOP206 7-59 -6.880 15  d2pwwa1 d.129.11.1 (A:2-114) Uncharacterized protein ABC2387 {Bacillus clausii [TaxId: 79880]}
VFDB 1-66 -3.690 13  VFG000430(gi:16763122) (tviC) Vi polysaccharide biosynthesis protein, epimerase TviC [Vi antigen (VF0101)] [Salmonella enterica subsp. enterica serovar Typhi str. CT18]
15 CAJ09972.1 Enoyl-CoA hydratase/isomerase [Brucella abortus 2308] 264 COG0516 1-262 -70.800 27  [I] COG1024 Enoyl-CoA hydratase/carnithine racemase
H.sapiens 7-262 -82.800 24  sp|Q96DC8|ECHD3_HUMAN Enoyl-CoA hydratase domain-containing protein 3, mitochondrial OS=Homo sapiens GN=ECHDC3 PE=1 SV=2
HGM_OVER 22-145 -4.400 15  PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;
JCSG0516 3-261 -62.600 22  WT20715A.ECH1 NM_001398 422936 Selected-2010-11-11
NEW_HUMAN_DOMAINS 144-216 -4.650 17  sp|Q6ZQQ6|WDR87_HUMAN WD repeat-containing protein 87 OS=Homo sapiens GN=WDR87 PE=2 SV=3 (Range: 2619-2702)
PDB0516 3-263 -104.000 33  3i47_A mol:protein length:268 Enoyl CoA hydratase/isomerase (Crotonase)
PfamA30U 13-255 -65.900 17  PF00378.18; PKSI_BACSU/10-249; Enoyl-CoA hydratase/isomerase
SCOP206 6-261 -104.000 33  d3i47a1 c.14.1.0 (A:4-260) automated matches {Legionella pneumophila [TaxId: 272624]}
VFDB 1-261 -6.270 11  VFG000469(gi:16764163) (slrP) type III secretion system effector SlrP, E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
16 CAJ09973.1 HMG-CoA lyase-like [Brucella abortus 2308] 287 COG0516 13-281 -27.200 18  [E] COG0119 Isopropylmalate/homocitrate/citramalate synthases
H.sapiens 1-287 -128.000 50  sp|P35914|HMGCL_HUMAN(removed signalp:1-23) Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Homo sapiens GN=HMGCL PE=1 SV=2
HGM_OVER 1-141 -3.630 14  HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;
JCSG0516 3-281 -24.500 19  TM0553 TM0553 282426 Crystal|NMR-2005-01-21
NEW_HUMAN_DOMAINS 59-142 -5.660 12  sp|Q5JSJ4|DX26B_HUMAN Protein DDX26B OS=Homo sapiens GN=DDX26B PE=2 SV=1 (Range: 780-861)
PDB0516 1-287 -131.000 99  1ydn_A mol:protein length:295 HYDROXYMETHYLGLUTARYL-COA LYASE
PfamA30U 4-278 -28.100 21  PF00682.17; LEU1_ECOLI/4-273; HMGL-like
SCOP206 2-280 -33.000 18  d4lrsa1 c.1.10.0 (A:10-294) automated matches {Thermomonospora curvata [TaxId: 471852]}
VFDB 79-188 -6.190 19  VFG001931(gi:15792793) (cadF) outer membrane fibronectin-binding protein [CadF (VF0322)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
17 CAJ09974.1 Biotin/lipoyl attachment:Biotin-requiring enzyme, attachment site:Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl [Brucella abortus 2308] 673 COG0516 9-669 -136.000 42  [IE] KOG0238 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit
H.sapiens 5-271 -90.100 59  sp|Q96RQ3|MCCA_HUMAN Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Homo sapiens GN=MCCC1 PE=1 SV=3 (Range: 1-300)
122-423 -96.800 60  sp|Q96RQ3|MCCA_HUMAN Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Homo sapiens GN=MCCC1 PE=1 SV=3 (Range: 151-450)
272-551 -68.600 40  sp|Q96RQ3|MCCA_HUMAN Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Homo sapiens GN=MCCC1 PE=1 SV=3 (Range: 301-600)
340-629 -43.300 16  sp|O00763|ACACB_HUMAN(removed signalp:1-24) Acetyl-CoA carboxylase 2 OS=Homo sapiens GN=ACACB PE=1 SV=3 (Range: 601-900)
424-673 -41.000 24  sp|Q96RQ3|MCCA_HUMAN Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Homo sapiens GN=MCCC1 PE=1 SV=3 (Range: 451-725)
HGM_OVER 162-395 -3.640 11  PB000716 Q60CS7_METCA/1-294 PB000716; Pfam-B_716;
JCSG0516 5-673 -147.000 45  MA16080A NP_064551.3 400332 Cloned-2009-02-26
NEW_HUMAN_DOMAINS 139-214 -4.760 17  sp|Q5JVL4|EFHC1_HUMAN EF-hand domain-containing protein 1 OS=Homo sapiens GN=EFHC1 PE=1 SV=1 (Range: 1-82)
PDB0516 14-673 -149.000 50  3u9s_A mol:protein length:655 Methylcrotonyl-CoA carboxylase, alpha-subunit
PfamA30U 19-128 -53.800 64  PF00289.20; Q5P6X6_AROAE/1-110; Biotin carboxylase, N-terminal domain
133-345 -23.000 19  PF02786.15; CARB_YEAST/149-353; Carbamoyl-phosphate synthase L chain, ATP binding domain
359-464 -41.700 35  PF02785.17; Q0CM38_ASPTN/307-414; Biotin carboxylase C-terminal domain
603-668 -14.200 25  PF00364.20; BCCP_SOYBN/186-260; Biotin-requiring enzyme
SCOP206 19-132 -55.100 61  d2w70a1 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]}
133-353 -74.300 53  d2w70a2 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]}
354-464 -35.400 25  d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
593-668 -28.100 38  d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
VFDB 593-672 -15.600 17  VFG005761(gi:22536829) (cylX) acetyl coenzyme A (CoA) carboxylase CylX [Beta-hemolysin/cytolysin (CVF171)] [Streptococcus agalactiae 2603V/R]
18 CAJ09975.1 Carboxyl transferase family [Brucella abortus 2308] 535 COG0516 1-535 -188.000 70  [I] COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta)
H.sapiens 1-535 -189.000 64  sp|Q9HCC0|MCCB_HUMAN(removed signalp:1-15) Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Homo sapiens GN=MCCC2 PE=1 SV=1
HGM_OVER 317-405 -3.070 19  HGC00672 gi|162843654|dbj|BABA01001055.1|4.0 TMP00845;
JCSG0516 1-535 -185.000 64  MA0716C NP_071415.1 400207 Cloned-2009-02-26
NEW_HUMAN_DOMAINS 291-376 -5.950 12  tr|E9PJK8|E9PJK8_HUMAN Uncharacterized protein OS=Homo sapiens GN=SWAP70 PE=4 SV=1 (Range: 62-149)
PDB0516 1-535 -187.000 70  3u9r_B mol:protein length:555 Methylcrotonyl-CoA carboxylase, beta-subunit
PfamA30U 47-533 -176.000 62  PF01039.20; MCCB_ARATH/93-585; Carboxyl transferase domain
SCOP206 1-267 -78.700 22  d3gf3a1 c.14.1.4 (A:3-291) Glutaconyl-CoA decarboxylase A subunit {Clostridium symbiosum [TaxId: 1512]}
270-535 -90.400 27  d3gf3a2 c.14.1.4 (A:292-587) Glutaconyl-CoA decarboxylase A subunit {Clostridium symbiosum [TaxId: 1512]}
VFDB 180-527 -5.150 16  VFG002365(gi:123443283) (gmd) GDP-mannose 4,6-dehydratase [O-antigen (VF0392)] [Yersinia enterocolitica subsp. enterocolitica 8081]
19 CAJ09978.1 unnamed protein product [Brucella abortus 2308] 127 COG0516 1-124 -45.600 49  [S] COG4530 Uncharacterized protein conserved in bacteria
H.sapiens 8-124 -13.300 10  sp|Q12766|HMGX3_HUMAN HMG domain-containing protein 3 OS=Homo sapiens GN=HMGXB3 PE=2 SV=2 (Range: 751-1050)
HGM_OVER 7-34 -6.490 20  PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;
JCSG0516 11-47 -13.000 10  SP17819A ZP_02039926.1 413525 Purified-2010-09-29
39-127 -9.620 MA16111A NP_055448.1 400166 Selected-2008-12-22
NEW_HUMAN_DOMAINS 8-36 -11.000 24  sp|Q12766|HMGX3_HUMAN HMG domain-containing protein 3 OS=Homo sapiens GN=HMGXB3 PE=2 SV=2 (Range: 839-896)
PDB0516 1-33 -11.700 27  4d5y_j mol:protein length:97 60S RIBOSOMAL PROTEIN EL37
9-68 -11.600 2gqj_A mol:protein length:98 Zinc finger protein KIAA1196
PfamA30U 1-108 -42.200 43  PF09538.8; B9JYL9_AGRVS/1-108; Protein of unknown function (FYDLN_acid)
SCOP206 12-35 -10.800 16  d2gmga1 a.4.5.82 (A:10-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}
VFDB 1-123 -8.910 VFG022130(gi:15607431) (eccD3) Type IIV secretion system transmembrane protein EccD3 [ESX-3 (VF0521)] [Mycobacterium tuberculosis H37Rv]
20 CAJ09979.1 ATP/GTP-binding site motif A (P-loop):EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase):3-phosphoshikimate 1-carbo [Brucella abortus 2308] 450 COG0516 13-440 -59.600 25  [E] COG0128 5-enolpyruvylshikimate-3-phosphate synthase
H.sapiens 129-432 -6.420 14  sp|Q6KC79|NIPBL_HUMAN Nipped-B-like protein OS=Homo sapiens GN=NIPBL PE=1 SV=2 (Range: 151-450)
HGM_OVER 59-317 -3.450 13  PB001565 Q6LS01_PHOPR/1-384 PB001565; Pfam-B_1565;
JCSG0516 22-443 -119.000 39  TM0345 TM0345 282220 Purified-2001-03-14
NEW_HUMAN_DOMAINS 89-126 -4.470 23  sp|Q96I76|GPTC3_HUMAN G patch domain-containing protein 3 OS=Homo sapiens GN=GPATCH3 PE=2 SV=1 (Range: 177-247)
PDB0516 1-450 -149.000 80  2gg4_A mol:protein length:455 3-phosphoshikimate 1-carboxyvinyltransferase
PfamA30U 12-437 -23.300 20  PF00275.18; MURA_ECOLI/6-406; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
SCOP206 6-447 -146.000 81  d2pqca_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Agrobacterium sp. [TaxId: 268951]}
VFDB 219-359 -6.110 17  VFG000374(gi:16082708) (yopK/yopQ) type III secretion system effector YopK/YopQ, regulating Yops injection from within host cells [TTSS (VF0140)] [Yersinia pestis CO92]


FFAS is supported by the NIH grant R01-GM087218-01
1 2 0 2 5 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]