FFAS03: Fold & Function Assignment System
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Godzik Lab

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Messages: All databases updated in April, 2008, PDB database is updated every Wednesday.
Databases of virulence factors (VFDB) and human proteins related to diseases (HUMSAVAR) are now available for FFAS searches.
1.Please, paste one amino-acid sequence in fasta format (if the fasta description line is included, make sure enter a new line after it)
2.Please, submit the next sequence only after completion of your previous search.
3.Sequences longer than 1000 aa should be split into (putative) domains.

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Default Sequence pool used to calculate query profile(s) is updated monthly.
Check here: if you prefer to build query profile(s) from the original "sequence pool" used for template profiles.

Select database(s) to be searched, and click Search (to select multiple databases hold down the CTRL key):
Databases of profiles:

Hot Paper and Paper of the Day:
Hot Paper from Godzik Lab     Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.
Paper of the Day     Rychlewski L, Jaroszewski L, Li W, Godzik A. Comparison of sequence profiles. Strategies for structural predictions using sequence information. Protein Sci. 2000 Feb;9(2):232-41.

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