current user: public


All databases were updated in August, 2011, PDB database is updated every Wednesday.
Preliminary proteome of E.coli.O104:H4 (EHEC) added to FFAS (gene predictions from Era7 Bioinformatics).
1. Please, paste one amino-acid sequence in fasta format
  (please sign in to submit more sequences and to store a list of your results)
2. Sequences longer than 1000 aa should be split into (putative) domains.
3. Examples of ffas server input and resulting ouput.

    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100


4. Option: upload psi-blast result in text format to calculate the profile (otherwise psi-blast is ran on the server)
 (can be used for only one query sequence, which should be provided in the upper text field)


5. Option: check this box if you would like to use a bigger sequence-pool database to calculate protein profile.

Select database(s) to be searched, and click Search (to select multiple databases click while holding down the CTRL key):
Databases of profiles:

FFAS is supported by the NIH grant R01-GM087218-01
2 8 8 9 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Grynberg M, Godzik A. NERD: a DNA processing-related domain present in the anthrax virulence plasmid, pXO1. Trends Biochem Sci. 2004 Mar;29(3):106-10.